CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcoleus sp. PCC 7113 (NC_019738 7470430 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 33.06 kb   Average length of SSR  : 13.95 bp
Coding      : 183     Non-Coding           : 39   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 96 80 8 37 225
IMPERFECT 3 218 1825 1715 190 173 4124
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAAGAT)318672688672705Coding
2. (AGATAG)424691181691204Coding
3. (CTCAGT)31810073131007330Coding
4. (TCCGTC)31810211831021200Non coding
5. (TATAGA)31811506121150629Non coding
6. (ACACCA)31812523401252357Coding
7. (CCCAAC)42412523721252395Coding
8. (CCAACC)42412524031252426Coding
9. (CCCAAC)31812524381252455Coding
10. (CCCAAC)42412524681252491Coding
11. (ACAGCC)31812867241286741Coding
12. (TGGGGG)31814392331439250Non coding
13. (TTTTGA)31816319491631966Coding
14. (AAGCCC)31821219622121979Coding
15. (TTGATA)31823267472326764Non coding
16. (ACACCA)42424146032414626Coding
17. (CCAACA)31824146302414647Coding
18. (CCAACT)31824147322414749Coding
19. (TACAGT)31828875702887587Non coding
20. (TTCACC)31829962962996313Coding
21. (CCTAAA)42430268573026880Non coding
22. (CCTGTG)31833397643339781Coding
23. (ACACGG)42434740143474037Coding
24. (GTTGGG)31839710913971108Coding
25. (GGTGTA)31841004694100486Coding
26. (ACGCCA)31841171734117190Coding
27. (CCAACC)42442402924240315Coding
28. (CCAAGC)53046770484677077Coding
29. (CCATTG)42448355144835537Coding
30. (ACCCAT)31851012915101308Coding
31. (ATCAGA)31851749395174956Coding
32. (AACCCG)31861257126125729Coding
33. (CTGGCA)31861386976138714Coding
34. (TCACAC)31861554826155499Coding-Non coding
35. (CATCGT)31864255536425570Coding
36. (TGCCTG)42468245816824604Coding
37. (GTGCCT)31868246226824639Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.