CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcoleus sp. PCC 7113 (NC_019738 7470430 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 33.06 kb   Average length of SSR  : 13.95 bp
Coding      : 183     Non-Coding           : 39   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 96 80 8 37 225
IMPERFECT 3 218 1825 1715 190 173 4124
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TATT)3122629526306Coding
2. (TCGC)3123440334414Coding
3. (TTC)4123616436175Coding
4. (GCCA)3127421274223Coding
5. (CCA)412153424153435Coding
6. (GTTT)312183112183123Coding
7. (TCT)412224657224668Coding
8. (GATA)312243828243839Non coding
9. (ATC)412338787338798Coding
10. (TTGG)312361194361205Coding
11. (AGAT)312406195406206Non coding
12. (ATC)721473310473330Coding
13. (CAG)412482107482118Coding
14. (CAG)412499435499446Coding
15. (GGAT)312499731499742Coding
16. (TCA)412519340519351Coding
17. (AACT)312560473560484Coding
18. (TTGG)312564188564199Coding
19. (G)1313602720602732Coding
20. (GAAGAT)318672688672705Coding
21. (AGATAG)424691181691204Coding
22. (AACC)312702138702149Coding
23. (CGAGA)315789197789211Non coding
24. (ATTG)312792617792628Coding
25. (ATCT)312859418859429Non coding
26. (GTT)412905151905162Coding
27. (TTGC)312958870958881Coding
28. (GCA)412980257980268Coding
29. (ATCC)312984087984098Coding
30. (TTG)412990202990213Coding
31. (TCTA)31210036121003623Non coding
32. (CTCAGT)31810073131007330Coding
33. (TCCGTC)31810211831021200Non coding
34. (AGCC)31210381601038171Coding
35. (CCA)41210606001060611Coding
36. (GCG)41210911721091183Coding
37. (TAAC)31211366931136704Non coding
38. (TATAGA)31811506121150629Non coding
39. (TATTT)31511548451154859Coding
40. (TTTA)31211550581155069Coding
41. (AAG)41211739701173981Coding
42. (ACACCA)31812523401252357Coding
43. (CCCAAC)42412523721252395Coding
44. (CCAACC)42412524031252426Coding
45. (CCCAAC)31812524381252455Coding
46. (CCCAAC)42412524681252491Coding
47. (AACC)31212743681274379Coding
48. (ACAGCC)31812867241286741Coding
49. (ATT)51513336271333641Coding-Non coding
50. (GCA)41213410021341013Non coding
51. (AATT)31214085711408582Coding
52. (GAGT)31214309921431003Coding
53. (TGGGGG)31814392331439250Non coding
54. (CGG)41215097961509807Coding
55. (TTAA)31215705461570557Non coding
56. (CAT)41216126871612698Coding
57. (TTTTGA)31816319491631966Coding
58. (ATC)51516397861639800Coding
59. (ATT)41216453671645378Non coding
60. (AGCC)31216548381654849Coding
61. (TTTA)31216773101677321Coding
62. (GCTG)31217127591712770Coding
63. (TCTA)31218050671805078Non coding
64. (AGC)41218098301809841Coding
65. (ATTT)31218858091885820Coding
66. (TTA)41218902861890297Non coding
67. (CAA)41219226891922700Coding
68. (AATC)31219648001964811Coding
69. (CTG)41219945461994557Coding
70. (TTGC)31220021612002172Coding
71. (GACT)31220389462038957Non coding
72. (CCT)41220841112084122Coding
73. (CAA)41221088932108904Coding
74. (AAGCCC)31821219622121979Coding
75. (GCC)41221297832129794Coding
76. (TCA)41221556062155617Coding
77. (GATGT)42022445162244535Coding-Non coding
78. (GTCA)31222523352252346Coding
79. (GCC)41222668172266828Coding
80. (TGAA)31222851522285163Coding
81. (ACTGA)31522870892287103Non coding
82. (TGC)41222954902295501Coding
83. (GCG)41223158282315839Coding
84. (TTGATA)31823267472326764Non coding
85. (GGC)41223318842331895Coding
86. (CACAC)31523928622392876Non coding
87. (AAG)41223973232397334Coding
88. (ACACCA)42424146032414626Coding
89. (CCAACA)31824146302414647Coding
90. (CCAACT)31824147322414749Coding
91. (CCTT)31224249532424964Coding
92. (ACTC)31224473472447358Coding
93. (CTCA)31224838022483813Coding-Non coding
94. (CAA)41224898462489857Coding
95. (AATG)41625397472539762Non coding
96. (TCGC)31226275402627551Coding
97. (GAGG)31226635522663563Coding
98. (CTT)41227227802722791Coding
99. (CTGG)31228246832824694Coding
100. (TTG)51528492702849284Coding
101. (TACAGT)31828875702887587Non coding
102. (GGC)51529558142955828Coding
103. (TGC)41229730282973039Coding
104. (ATTA)31229835082983519Coding
105. (TTCACC)31829962962996313Coding
106. (CCTAAA)42430268573026880Non coding
107. (GAAA)31230454103045421Non coding
108. (TTC)41230494543049465Coding
109. (AGGA)31230836003083611Coding
110. (ACA)41231747963174807Coding
111. (CCA)41232245893224600Coding
112. (TGA)51532847483284762Coding
113. (CGA)41232951863295197Coding
114. (AATA)31233157923315803Coding
115. (CCTGTG)31833397643339781Coding
116. (GCTT)41633518633351878Coding
117. (GTTA)31234038663403877Non coding
118. (ACACGG)42434740143474037Coding
119. (ATT)41236078133607824Non coding
120. (GCC)41236212053621216Coding
121. (CAAT)31236363403636351Non coding
122. (ACC)41236584753658486Coding
123. (GGGA)31236622983662309Non coding
124. (ATAA)31236792983679309Non coding
125. (CAAA)31237447123744723Coding
126. (TAC)41238136043813615Coding
127. (GTTGGG)31839710913971108Coding
128. (TTTTG)31539814003981414Coding
129. (GGTGTA)31841004694100486Coding
130. (ACGCCA)31841171734117190Coding
131. (GAT)41241227304122741Coding
132. (CAC)41241574104157421Coding
133. (ATC)41241887484188759Coding
134. (GCC)51542285674228581Coding
135. (CCAACC)42442402924240315Coding
136. (CCCA)31242638924263903Coding
137. (GAA)51542726924272706Coding
138. (GCCT)31243952684395279Coding
139. (GCG)41244661544466165Coding
140. (TGA)41244957624495773Coding
141. (GGT)41245577364557747Coding
142. (CAA)51545630434563057Coding
143. (TGA)41246397874639798Coding
144. (CCAAGC)53046770484677077Coding
145. (ATTA)31247218734721884Non coding
146. (ATG)41247599514759962Coding
147. (GCG)41247704684770479Coding
148. (ACCC)31247867014786712Non coding
149. (CAAC)31247996914799702Coding
150. (CTT)41248101844810195Coding
151. (CCATTG)42448355144835537Coding
152. (GGAG)31248772614877272Coding
153. (CTG)41249801824980193Coding
154. (GAA)41249976564997667Coding
155. (GCT)41250003035000314Coding
156. (GCC)41250127655012776Coding
157. (TGT)41250394325039443Non coding
158. (ACCCAT)31851012915101308Coding
159. (CTGA)52051070325107051Coding
160. (ATCC)31251220895122100Coding
161. (CCA)41251366995136710Coding
162. (GATG)31251405615140572Coding
163. (ATCAGA)31851749395174956Coding
164. (TGA)41252176105217621Coding
165. (CCG)41252678285267839Coding
166. (CAG)41253079055307916Coding
167. (TA)71453163315316344Non coding
168. (GATG)31253971475397158Non coding
169. (TTGG)31254391015439112Coding
170. (CAAA)31254961615496172Non coding
171. (GCG)41255795835579594Coding
172. (TGGG)31256041875604198Coding
173. (ACG)41256297535629764Coding
174. (GCA)41256383915638402Coding
175. (TAT)41256957625695773Coding
176. (CGC)41256981635698174Coding
177. (CCAT)31257809515780962Coding
178. (AAGA)31257944385794449Non coding
179. (CAA)41258011655801176Coding
180. (GTTG)31258180775818088Coding
181. (AGCC)31258585325858543Coding
182. (ATTT)31258845695884580Coding
183. (GCC)41258896815889692Coding
184. (AAT)41258898585889869Coding
185. (TTG)41259422065942217Coding
186. (TAAA)31259594555959466Non coding
187. (CGG)51560339866034000Coding
188. (AACCCG)31861257126125729Coding
189. (CTGGCA)31861386976138714Coding
190. (TCACAC)31861554826155499Coding-Non coding
191. (CT)61262079786207989Coding
192. (GTC)41262897186289729Coding
193. (TCT)61863026456302662Coding
194. (AACC)31263357836335794Coding
195. (CATCGT)31864255536425570Coding
196. (GAA)41264746826474693Coding
197. (CAT)51565005896500603Coding
198. (TGC)41265796526579663Coding
199. (GATTG)31566123606612374Coding
200. (AAG)41266234796623490Coding
201. (TTCC)31266401336640144Coding
202. (AAAT)31267180686718079Coding
203. (CTGA)31267271716727182Coding
204. (CAAAG)31567998786799892Coding
205. (TCAA)31268134556813466Non coding
206. (TGCCTG)42468245816824604Coding
207. (GTGCCT)31868246226824639Coding
208. (ACC)41268328646832875Coding
209. (TCT)41269905316990542Coding
210. (AGC)41270047997004810Coding
211. (AAGT)31270364267036437Coding
212. (TATG)31270528057052816Non coding
213. (AAT)41270834287083439Coding
214. (GTG)41271002327100243Coding
215. (TGA)41271502057150216Non coding
216. (CTC)41271581067158117Coding
217. (CGC)41271622727162283Coding
218. (TTGA)31272047897204800Coding
219. (GATG)31272256737225684Coding
220. (TA)61272407887240799Non coding
221. (GTT)41272702907270301Coding
222. (GCC)41272740697274080Coding
223. (GGAT)31273075487307559Coding
224. (TGC)41273727807372791Coding
225. (TCGC)31274657247465735Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.