CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcoleus sp. PCC 7113 (NC_019738 7470430 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 33.06 kb   Average length of SSR  : 13.95 bp
Coding      : 183     Non-Coding           : 39   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 96 80 8 37 225
IMPERFECT 3 218 1825 1715 190 173 4124
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)4123616436175Coding
2. (CCA)412153424153435Coding
3. (TCT)412224657224668Coding
4. (ATC)412338787338798Coding
5. (ATC)721473310473330Coding
6. (CAG)412482107482118Coding
7. (CAG)412499435499446Coding
8. (TCA)412519340519351Coding
9. (GTT)412905151905162Coding
10. (GCA)412980257980268Coding
11. (TTG)412990202990213Coding
12. (CCA)41210606001060611Coding
13. (GCG)41210911721091183Coding
14. (AAG)41211739701173981Coding
15. (ATT)51513336271333641Coding-Non coding
16. (GCA)41213410021341013Non coding
17. (CGG)41215097961509807Coding
18. (CAT)41216126871612698Coding
19. (ATC)51516397861639800Coding
20. (ATT)41216453671645378Non coding
21. (AGC)41218098301809841Coding
22. (TTA)41218902861890297Non coding
23. (CAA)41219226891922700Coding
24. (CTG)41219945461994557Coding
25. (CCT)41220841112084122Coding
26. (CAA)41221088932108904Coding
27. (GCC)41221297832129794Coding
28. (TCA)41221556062155617Coding
29. (GCC)41222668172266828Coding
30. (TGC)41222954902295501Coding
31. (GCG)41223158282315839Coding
32. (GGC)41223318842331895Coding
33. (AAG)41223973232397334Coding
34. (CAA)41224898462489857Coding
35. (CTT)41227227802722791Coding
36. (TTG)51528492702849284Coding
37. (GGC)51529558142955828Coding
38. (TGC)41229730282973039Coding
39. (TTC)41230494543049465Coding
40. (ACA)41231747963174807Coding
41. (CCA)41232245893224600Coding
42. (TGA)51532847483284762Coding
43. (CGA)41232951863295197Coding
44. (ATT)41236078133607824Non coding
45. (GCC)41236212053621216Coding
46. (ACC)41236584753658486Coding
47. (TAC)41238136043813615Coding
48. (GAT)41241227304122741Coding
49. (CAC)41241574104157421Coding
50. (ATC)41241887484188759Coding
51. (GCC)51542285674228581Coding
52. (GAA)51542726924272706Coding
53. (GCG)41244661544466165Coding
54. (TGA)41244957624495773Coding
55. (GGT)41245577364557747Coding
56. (CAA)51545630434563057Coding
57. (TGA)41246397874639798Coding
58. (ATG)41247599514759962Coding
59. (GCG)41247704684770479Coding
60. (CTT)41248101844810195Coding
61. (CTG)41249801824980193Coding
62. (GAA)41249976564997667Coding
63. (GCT)41250003035000314Coding
64. (GCC)41250127655012776Coding
65. (TGT)41250394325039443Non coding
66. (CCA)41251366995136710Coding
67. (TGA)41252176105217621Coding
68. (CCG)41252678285267839Coding
69. (CAG)41253079055307916Coding
70. (GCG)41255795835579594Coding
71. (ACG)41256297535629764Coding
72. (GCA)41256383915638402Coding
73. (TAT)41256957625695773Coding
74. (CGC)41256981635698174Coding
75. (CAA)41258011655801176Coding
76. (GCC)41258896815889692Coding
77. (AAT)41258898585889869Coding
78. (TTG)41259422065942217Coding
79. (CGG)51560339866034000Coding
80. (GTC)41262897186289729Coding
81. (TCT)61863026456302662Coding
82. (GAA)41264746826474693Coding
83. (CAT)51565005896500603Coding
84. (TGC)41265796526579663Coding
85. (AAG)41266234796623490Coding
86. (ACC)41268328646832875Coding
87. (TCT)41269905316990542Coding
88. (AGC)41270047997004810Coding
89. (AAT)41270834287083439Coding
90. (GTG)41271002327100243Coding
91. (TGA)41271502057150216Non coding
92. (CTC)41271581067158117Coding
93. (CGC)41271622727162283Coding
94. (GTT)41272702907270301Coding
95. (GCC)41272740697274080Coding
96. (TGC)41273727807372791Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.