CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcoleus sp. PCC 7113 (NC_019738 7470430 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 33.06 kb   Average length of SSR  : 13.95 bp
Coding      : 183     Non-Coding           : 39   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 96 80 8 37 225
IMPERFECT 3 218 1825 1715 190 173 4124
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TATT)3122629526306Coding
2. (TCGC)3123440334414Coding
3. (GCCA)3127421274223Coding
4. (GTTT)312183112183123Coding
5. (GATA)312243828243839Non coding
6. (TTGG)312361194361205Coding
7. (AGAT)312406195406206Non coding
8. (GGAT)312499731499742Coding
9. (AACT)312560473560484Coding
10. (TTGG)312564188564199Coding
11. (AACC)312702138702149Coding
12. (ATTG)312792617792628Coding
13. (ATCT)312859418859429Non coding
14. (TTGC)312958870958881Coding
15. (ATCC)312984087984098Coding
16. (TCTA)31210036121003623Non coding
17. (AGCC)31210381601038171Coding
18. (TAAC)31211366931136704Non coding
19. (TTTA)31211550581155069Coding
20. (AACC)31212743681274379Coding
21. (AATT)31214085711408582Coding
22. (GAGT)31214309921431003Coding
23. (TTAA)31215705461570557Non coding
24. (AGCC)31216548381654849Coding
25. (TTTA)31216773101677321Coding
26. (GCTG)31217127591712770Coding
27. (TCTA)31218050671805078Non coding
28. (ATTT)31218858091885820Coding
29. (AATC)31219648001964811Coding
30. (TTGC)31220021612002172Coding
31. (GACT)31220389462038957Non coding
32. (GTCA)31222523352252346Coding
33. (TGAA)31222851522285163Coding
34. (CCTT)31224249532424964Coding
35. (ACTC)31224473472447358Coding
36. (CTCA)31224838022483813Coding-Non coding
37. (AATG)41625397472539762Non coding
38. (TCGC)31226275402627551Coding
39. (GAGG)31226635522663563Coding
40. (CTGG)31228246832824694Coding
41. (ATTA)31229835082983519Coding
42. (GAAA)31230454103045421Non coding
43. (AGGA)31230836003083611Coding
44. (AATA)31233157923315803Coding
45. (GCTT)41633518633351878Coding
46. (GTTA)31234038663403877Non coding
47. (CAAT)31236363403636351Non coding
48. (GGGA)31236622983662309Non coding
49. (ATAA)31236792983679309Non coding
50. (CAAA)31237447123744723Coding
51. (CCCA)31242638924263903Coding
52. (GCCT)31243952684395279Coding
53. (ATTA)31247218734721884Non coding
54. (ACCC)31247867014786712Non coding
55. (CAAC)31247996914799702Coding
56. (GGAG)31248772614877272Coding
57. (CTGA)52051070325107051Coding
58. (ATCC)31251220895122100Coding
59. (GATG)31251405615140572Coding
60. (GATG)31253971475397158Non coding
61. (TTGG)31254391015439112Coding
62. (CAAA)31254961615496172Non coding
63. (TGGG)31256041875604198Coding
64. (CCAT)31257809515780962Coding
65. (AAGA)31257944385794449Non coding
66. (GTTG)31258180775818088Coding
67. (AGCC)31258585325858543Coding
68. (ATTT)31258845695884580Coding
69. (TAAA)31259594555959466Non coding
70. (AACC)31263357836335794Coding
71. (TTCC)31266401336640144Coding
72. (AAAT)31267180686718079Coding
73. (CTGA)31267271716727182Coding
74. (TCAA)31268134556813466Non coding
75. (AAGT)31270364267036437Coding
76. (TATG)31270528057052816Non coding
77. (TTGA)31272047897204800Coding
78. (GATG)31272256737225684Coding
79. (GGAT)31273075487307559Coding
80. (TCGC)31274657247465735Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.