CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.69 kb   Average length of SSR  : 12.48 bp
Coding      : 2731     Non-Coding           : 659   Coding and Non-Coding : 66
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AG111866518675Coding
2. GA11196225196235Coding
3. GA12209094209105Coding
4. GA11257901257911Coding
5. AT12389284389295Coding
6. AG12524731524742Coding
7. CT11568093568103Coding-Non coding
8. TA11605079605089Non coding
9. GA11662171662181Coding
10. TC11669449669459Coding-Non coding
11. GA11744892744902Non coding
12. TC12789530789541Coding
13. TC11820537820547Coding
14. TC12875196875207Coding
15. TA11931935931945Non coding
16. CT12931987931998Non coding
17. TC11939551939561Coding
18. GA13969802969814Coding
19. CA15971355971369Non coding
20. AG1110032161003226Coding
21. CT1210590581059069Coding
22. AG1111624331162443Coding
23. AC1112181351218145Coding
24. TA1212653641265375Non coding
25. CT1112728621272872Coding
26. AG1113430801343090Coding
27. CT1113696001369610Coding
28. GA1214713691471380Non coding
29. GA1115059551505965Coding
30. CA1116433741643384Coding
31. AG1116901371690147Coding
32. AT1116985231698533Coding
33. AT1117252451725255Coding
34. AG1117257441725754Coding
35. CA1117997311799741Coding
36. AT1118376791837689Coding
37. AT1118391211839131Non coding
38. AT1118397301839740Non coding
39. GA1218582541858265Coding
40. TA1119332281933238Coding
41. CT1121179112117921Coding
42. TA1122164242216434Non coding
43. GA1122816962281706Coding
44. TA1223265982326609Coding
45. GA1323271412327153Coding
46. TC1123344352334445Coding
47. TA1123748012374811Non coding
48. GA1124860702486080Coding
49. GA1325298962529908Coding
50. TA1126442932644303Non coding
51. GC1126474392647449Coding
52. AC1227038272703838Coding
53. GA1227104142710425Coding
54. GA1127555422755552Coding
55. AC1227623952762406Coding
56. GC1228960252896036Coding
57. GA1130224053022415Coding
58. AT1230357163035727Coding
59. AT1230505923050603Non coding
60. AC1330888773088889Coding
61. CT1431141293114142Non coding
62. AC1231173103117321Coding
63. AG1233231513323162Coding
64. CT1133303803330390Non coding
65. TC1134005943400604Coding
66. TA1234821163482127Coding
67. GA1435007233500736Coding
68. TA1435970033597016Non coding
69. GC1136079573607967Coding
70. CT1137937533793763Coding
71. AG1138075793807589Non coding
72. TA1139495273949537Coding
73. AT1139661703966180Non coding
74. CA1140182874018297Non coding
75. GA1140213984021408Coding
76. AT1140296534029663Coding
77. TG1241212734121284Coding
78. AG1142160504216060Non coding
79. AT1242548524254863Coding-Non coding
80. GC1142798154279825Coding
81. TG1142921714292181Non coding
82. GA1243190504319061Non coding
83. AT1343303254330337Coding
84. GA1143617514361761Non coding
85. TA1143701384370148Non coding
86. AG1244215904421601Coding
87. TA1544546474454661Coding
88. TC1144869964487006Coding
89. TG1145031624503172Coding
90. CT1145103534510363Coding
91. TC1146736564673666Non coding
92. TA2846921544692181Non coding
93. GA1147619784761988Coding
94. TC1347853614785373Coding
95. GA1248503274850338Coding
96. GT1248737864873797Coding
97. CT1248754774875488Coding
98. GA1149522004952210Non coding
99. CT1149836834983693Coding
100. TA1249939464993957Non coding
101. AT1450286645028677Coding
102. GA1150680925068102Coding
103. CT1151310315131041Non coding
104. TA1351635035163515Non coding
105. AG1253318415331852Non coding
106. CT1153400345340044Coding
107. GA1153608345360844Coding
108. CT1154567175456727Coding
109. GT1154738755473885Coding
110. TA1154829105482920Coding
111. AG1155127245512734Coding
112. AG1256031085603119Coding
113. GA1156157425615752Coding
114. TC1156439775643987Coding
115. GA1157572965757306Non coding
116. AT1258316525831663Coding
117. AT1258333795833390Coding
118. AT1258337255833736Coding
119. AT1258340855834096Coding
120. TA1258381485838159Non coding
121. AC1258387125838723Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.