CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.69 kb   Average length of SSR  : 12.48 bp
Coding      : 2731     Non-Coding           : 659   Coding and Non-Coding : 66
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CGGCAT187109571112Coding
2. AATGTT198089580913Coding
3. ATCGGT18140169140186Coding
4. GCGGTG18199115199132Coding
5. GGGGAT24247227247250Coding
6. TCACTG17378205378221Non coding
7. TTTTGC18412870412887Coding
8. TAACCA24493198493221Coding
9. ATAAAT18520996521013Coding
10. CGTTGA18534581534598Coding
11. TGATCG17600896600912Coding
12. GTGGGG19638960638978Non coding
13. CAAGCA18730333730350Coding
14. GTGGGG19743330743348Coding-Non coding
15. TGGGTG24749122749145Coding
16. GTGGGG19768032768050Non coding
17. GCGACG18798649798666Coding
18. TGAGGG1810332731033290Coding
19. ACCCTC1811791581179175Non coding
20. TGTGGG1911957451195763Coding
21. TGGCTA1912376011237619Coding
22. TTGATC1913246771324695Non coding
23. TCGCCG2413641671364190Coding
24. CTATCA1814861461486163Coding
25. TTATCT1814865701486587Non coding
26. GTTCGG2415007451500768Coding
27. ATGCTA1815525651552582Coding
28. ACAATC1716323451632361Coding
29. GTGGGG1916776571677675Coding
30. GTGGGG1917273781727396Coding-Non coding
31. GTGGGG1918105221810540Non coding
32. TCCTTC6018242111824270Coding
33. TCTGAT1818540301854047Coding
34. AAGCGA2218856471885668Coding
35. TCCCTA1920756822075700Non coding
36. CGAAGA1821283952128412Coding
37. AGCGGC1821863352186352Coding
38. CACACC3822683032268340Non coding
39. AGCTTT1822891312289148Coding
40. GGGGTT1923293752329393Non coding
41. GTAGGA1723307272330743Coding
42. CTCCTT1823523472352364Coding
43. TGGTTT2423792112379234Coding
44. GAACCA3623810222381057Coding
45. CAGAAG1825132282513245Coding
46. GATGAA4225927872592828Coding
47. TGATCG1828623522862369Coding
48. TCGTGG1828624062862423Coding
49. AGCTTT1829055272905544Coding
50. ACCTAT1829186222918639Coding
51. AAATCT1929192982919316Coding
52. GTAGGG1829447712944788Non coding
53. CTGTTT1829740752974092Coding
54. AAGTGG1830039493003966Coding
55. CAAATA1830529693052986Coding
56. CGGCTA38330670123067394Coding
57. GGCTAC5430670183067071Coding
58. GGCTCC7230670603067131Coding
59. TAGGAG2432164413216464Coding
60. ATGAAT1833289733328990Coding
61. GGGTGA2333805423380564Coding
62. ATAAAA1934129303412948Coding
63. TTCGCT2235988983598919Coding
64. GAAAAT1936442453644263Coding
65. TATCAG1936874733687491Non coding
66. AACCCC1937237503723768Non coding
67. AGTTGG3637330353733070Coding
68. CAATAA1838107843810801Coding
69. ATTGTT1938200183820036Coding
70. TTCATT1838257403825757Coding
71. GCCATC1838649183864935Coding
72. GATCCT1840510074051024Coding
73. GTGGGG1940881094088127Non coding
74. AAGAAA1841603394160356Coding
75. GAAATT1942782324278250Coding
76. AGATTT1843408914340908Non coding
77. ATCATT1843504674350484Non coding
78. ACCCCA3344284024428434Non coding
79. CTTCCA2444520704452093Coding
80. CGATCG1944584294458447Coding
81. CCCTTC1844733384473355Coding
82. CAACCC1845299134529930Coding
83. GTTAAC1846041454604162Coding
84. TTAACT2446608244660847Non coding
85. ACCGAT1946659604665978Coding
86. GGGGGT2446676034667626Coding
87. ATAGAT1846921954692212Non coding
88. GTCATC2447180814718104Coding
89. AATATC1850001105000127Non coding
90. AACCCC1950115025011520Non coding
91. TCGATA1850483115048328Coding
92. AACCCC1951086985108716Coding
93. GCGTTA1851776445177661Non coding
94. GTGGGG1952373825237400Non coding
95. GGAAGT1852735885273605Coding
96. TATCAG2652858015285826Non coding
97. GTGGGG1953195685319586Non coding
98. AGATGA2453326975332720Coding
99. CTGATC1853498865349903Coding
100. TCGATC1854402525440269Coding
101. GTGGGG1955207485520766Coding
102. GCTGTT1955516795551697Coding
103. TTGGTG1855716215571638Coding
104. AGCCAT1756676755667691Coding
105. CAAAAA1957169195716937Non coding
106. GCAGGA1757895815789597Coding
107. TCTTTA1958257295825747Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.