CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 301     Density of SSR      : 1SSR/ 19.41 kb   Average length of SSR  : 13.17 bp
Coding      : 229     Non-Coding           : 65   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGGTTG)3186606166078Coding
2. (GGGTTG)318195001195018Coding
3. (GGGGAT)318247227247244Coding
4. (TTATTG)318690928690945Coding
5. (TGGGTG)318749122749139Coding
6. (CAAACC)31810965211096538Coding
7. (GTCCCC)31811594151159432Coding
8. (GGGCTG)31812838771283894Coding
9. (TCGCCG)31813641671364184Coding
10. (GGGTTG)31813934051393422Coding
11. (GTTCGG)31815007451500762Coding
12. (CCTTCT)42418242301824253Coding
13. (CCCACA)31822683012268318Non coding
14. (TGGTTT)31823792112379228Coding
15. (GAACCA)31823810222381039Coding
16. (GATGAA)53025927932592822Coding
17. (CAACCC)31830231053023122Coding
18. (CGGCTC)53030670653067094Coding
19. (CGGCTA)31830671553067172Coding
20. (CGGCTA)42430671793067202Coding
21. (CGGCTC)31830673113067328Coding
22. (CGGCTC)31830673353067352Coding
23. (GGCTAC)31830673663067383Coding
24. (TAGGAG)31832164413216458Coding
25. (CAACCC)31832413393241356Coding
26. (GGGTGA)31833805423380559Coding
27. (AGATGA)31837305343730551Coding
28. (AGTTGG)42437330353733058Coding
29. (CAACCC)31841943164194333Coding
30. (CAACCC)31843532884353305Coding
31. (CTTCCA)31844520704452087Coding
32. (GGGGGT)31846676094667626Coding
33. (TCGTCA)31847180794718096Coding
34. (CCCAAA)31848894434889460Coding
35. (AAGATG)31853327025332719Coding
36. (CCTGAT)31853498855349902Coding
37. (TGATCA)31855331865533203Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.