CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 301     Density of SSR      : 1SSR/ 19.41 kb   Average length of SSR  : 13.17 bp
Coding      : 229     Non-Coding           : 65   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGGTTG)3186606166078Coding
2. (CCA)4126624666257Coding
3. (ATTG)3127989279903Coding
4. (AGA)5159563795651Coding
5. (AAAT)312100349100360Coding
6. (TTTAT)315109279109293Coding
7. (TTAGT)315117339117353Non coding
8. (GATC)312153940153951Coding
9. (GTGG)312159989160000Non coding
10. (TCGC)312161238161249Non coding
11. (TCCTA)315166503166517Non coding
12. (TGAC)312177257177268Coding
13. (GTGG)312194260194271Non coding
14. (GGGTTG)318195001195018Coding
15. (CCA)412195186195197Coding
16. (TAA)412199956199967Coding
17. (GCC)412212815212826Coding
18. (ATC)412229443229454Coding
19. (GCA)412236901236912Coding
20. (GGGGAT)318247227247244Coding
21. (CCAA)312262255262266Coding
22. (TTTA)312271751271762Coding-Non coding
23. (AAT)412286578286589Coding
24. (CAAT)312310739310750Coding
25. (AGTT)520316588316607Non coding
26. (TTG)412337990338001Coding
27. (CCAC)312347102347113Non coding
28. (CCAC)312485530485541Non coding
29. (TGG)412487398487409Coding
30. (GTGG)312522536522547Non coding
31. (TGG)412535400535411Coding
32. (GCC)412541478541489Coding
33. (CCAC)312542453542464Non coding
34. (CGC)412578868578879Coding
35. (CCAC)312587728587739Non coding
36. (TTC)412591935591946Coding
37. (TAAC)312597677597688Non coding
38. (TCC)515620311620325Coding
39. (TAC)412671422671433Coding
40. (ATT)412685420685431Coding
41. (TTATTG)318690928690945Coding
42. (TTTC)312710365710376Non coding
43. (AATT)312711667711678Coding
44. (TTTA)312736162736173Non coding
45. (TGGGTG)318749122749139Coding
46. (CGC)412794705794716Coding
47. (GGT)412832027832038Coding
48. (CCAA)312943482943493Coding
49. (GCG)412960330960341Coding
50. (TCGA)312978272978283Coding
51. (ACCT)312983993984004Non coding
52. (TAA)51510125861012600Coding
53. (ACCA)31210454731045484Coding
54. (CAAACC)31810965211096538Coding
55. (TGG)41210976151097626Coding
56. (TAGT)31211463581146369Non coding
57. (GTCCCC)31811594151159432Coding
58. (CCAC)31211643041164315Non coding
59. (ACC)41211799201179931Coding
60. (TCT)41212771191277130Coding
61. (GGGCTG)31812838771283894Coding
62. (GATA)31213242471324258Non coding
63. (GAG)41213339651333976Non coding
64. (GAA)41213439301343941Coding
65. (GTG)41213637121363723Coding
66. (TCGCCG)31813641671364184Coding
67. (CGT)41213646331364644Coding
68. (CGT)61813648251364842Coding
69. (GTT)41213802901380301Coding
70. (GGC)41213921521392163Coding
71. (GGGTTG)31813934051393422Coding
72. (CCA)41213935901393601Coding
73. (GATAA)31514353191435333Non coding
74. (AAAG)31214593021459313Coding
75. (TAA)41214621921462203Coding
76. (GTGC)31214829531482964Coding
77. (GTTCGG)31815007451500762Coding
78. (TATT)31215275741527585Coding
79. (ATTG)31215334641533475Non coding
80. (GAA)41215335911533602Coding
81. (TCT)41215405191540530Coding
82. (TCC)41215573591557370Coding
83. (TAC)41215729501572961Non coding
84. (CCA)41215740021574013Coding
85. (GATC)31215837841583795Coding
86. (CAG)41215960421596053Coding
87. (GCC)41216004351600446Coding
88. (GTG)41216309251630936Coding
89. (TCGG)31216429571642968Coding
90. (CCAC)31216465051646516Non coding
91. (GACC)31216509061650917Coding
92. (CCAC)31216564071656418Non coding
93. (TCAA)31216799961680007Coding
94. (GTGG)31217254301725441Non coding
95. (TCG)41217427231742734Coding
96. (ATAG)31217451301745141Non coding
97. (ACG)41217560151756026Coding
98. (ACC)41217919741791985Coding
99. (TAAG)31217972721797283Non coding
100. (AATTA)31518011801801194Non coding
101. (TGG)41218103361810347Coding
102. (TGG)41218111691811180Coding
103. (CCTTCT)42418242301824253Coding
104. (TTG)41218269931827004Coding
105. (TTCA)31218293391829350Non coding
106. (TAA)41218519861851997Coding
107. (GTG)41218617161861727Coding
108. (ACC)41219031151903126Coding
109. (ATCG)52019371141937133Coding
110. (TTCT)31219399431939954Coding
111. (ATT)41219455631945574Coding
112. (GTGG)31219496911949702Non coding
113. (TTTG)31219501941950205Coding
114. (TTAT)31219556051955616Non coding
115. (CAC)41219556921955703Coding
116. (GCC)41220260982026109Coding
117. (GCG)51520512142051228Coding
118. (AATT)31220947862094797Coding
119. (TTAT)62421261502126173Non coding
120. (CTTT)31221682642168275Coding
121. (ACTA)31221806882180699Non coding
122. (TTGA)31221852622185273Coding
123. (TTA)41221937952193806Coding
124. (GTGG)31222037582203769Non coding
125. (GTG)41222180432218054Coding
126. (TTA)41222638982263909Non coding
127. (CCCACA)31822683012268318Non coding
128. (AATT)31222880642288075Coding
129. (CGC)41222907982290809Coding
130. (TGG)51523218262321840Coding
131. (TGGTTT)31823792112379228Coding
132. (GAACCA)31823810222381039Coding
133. (AAAGA)31524288632428877Coding
134. (CTT)41224961602496171Coding
135. (CCAC)31224976012497612Non coding
136. (CCAC)31225005652500576Non coding
137. (GATT)31225118992511910Coding
138. (TGG)41225467702546781Coding
139. (GATGAA)53025927932592822Coding
140. (GAG)41225928262592837Coding
141. (GGA)41225946102594621Coding
142. (TTA)41226066942606705Coding
143. (TGG)41226150612615072Coding
144. (ATAG)31226333332633344Coding-Non coding
145. (ATTG)31226559572655968Coding-Non coding
146. (TGCT)31226907942690805Coding
147. (CCA)41227002612700272Coding
148. (CAA)41227010602701071Coding
149. (GAAA)31227117292711740Non coding
150. (TAAT)31227233602723371Coding-Non coding
151. (AATT)31227497352749746Coding
152. (ATG)41227518122751823Coding
153. (TAAA)31227765632776574Non coding
154. (ATCG)31227923212792332Coding
155. (ATTT)31228007822800793Coding
156. (TAA)41228406232840634Coding
157. (TGA)41228455372845548Coding
158. (CCAC)31229036952903706Non coding
159. (TTTC)31229165932916604Coding
160. (AATA)31229943962994407Coding
161. (TGG)41230229263022937Coding
162. (CAACCC)31830231053023122Coding
163. (TTTG)31230267043026715Coding
164. (AAT)41230446903044701Coding
165. (CGGCTC)53030670653067094Coding
166. (CGGCTA)31830671553067172Coding
167. (CGGCTA)42430671793067202Coding
168. (CGGCTC)31830673113067328Coding
169. (CGGCTC)31830673353067352Coding
170. (GGCTAC)31830673663067383Coding
171. (CCAC)31230682833068294Non coding
172. (GGAA)31230966613096672Coding
173. (CT)61231141293114140Non coding
174. (G)141431370613137074Non coding
175. (ATT)41231501723150183Coding
176. (GCAA)31231686473168658Coding
177. (ATT)41231761923176203Coding
178. (TCG)41231830493183060Coding
179. (GCC)41231958173195828Coding
180. (TAGGAG)31832164413216458Coding
181. (CAA)41232196803219691Coding
182. (TGG)41232411603241171Coding
183. (CAACCC)31832413393241356Coding
184. (CTCC)31232511023251113Non coding
185. (TCAA)31232773083277319Non coding
186. (GGGTGA)31833805423380559Coding
187. (ATT)41233905433390554Coding
188. (AGA)41234059483405959Coding
189. (AGTT)31234920323492043Coding
190. (GTT)41234963643496375Coding
191. (GGC)41235071403507151Coding
192. (GTG)41235547923554803Coding
193. (CAAT)31235602613560272Coding
194. (GGC)41235658203565831Coding
195. (AAAC)31235769333576944Coding
196. (TTG)41236870563687067Coding
197. (TCAA)31236876863687697Coding
198. (GTA)41237156673715678Coding
199. (CCAC)31237239133723924Non coding
200. (AGATGA)31837305343730551Coding
201. (AGTTGG)42437330353733058Coding
202. (TGC)41237571433757154Coding
203. (TTTC)31237645903764601Non coding
204. (CGG)41237796663779677Coding
205. (AAG)41237890343789045Coding
206. (TA)61238414023841413Non coding
207. (ATTT)31238647493864760Coding
208. (AGCG)31238913033891314Coding
209. (CCAA)31239074263907437Coding
210. (CCAC)31239207573920768Non coding
211. (GATC)31239358043935815Coding
212. (GGC)41239513773951388Coding
213. (GGC)41239589943959005Coding
214. (CAG)41240329614032972Coding
215. (TCG)41240468124046823Coding
216. (TTA)41241229614122972Coding
217. (TCCT)31241254744125485Coding
218. (AATA)31241473824147393Coding
219. (GGC)41241806184180629Coding
220. (GGC)41241819194181930Coding
221. (TGG)41241941374194148Coding
222. (CAACCC)31841943164194333Coding
223. (GAA)41242113894211400Coding
224. (GTGG)31242118464211857Non coding
225. (GCG)41242225904222601Coding
226. (CAG)41242305314230542Coding
227. (GTGG)31242308924230903Non coding
228. (ATCG)31242329974233008Coding
229. (GATA)31242439714243982Non coding
230. (ATAA)31242670644267075Coding
231. (GAA)41243353954335406Coding
232. (TGG)41243531094353120Coding
233. (CAACCC)31843532884353305Coding
234. (CCAC)31243540354354046Non coding
235. (GTC)41243550734355084Coding
236. (TTAG)31244125444412555Non coding
237. (CTTCCA)31844520704452087Coding
238. (TA)61244546474454658Coding
239. (TACC)31244551274455138Coding
240. (TTC)41245163854516396Coding
241. (T)121245307534530764Non coding
242. (GTGG)31246047404604751Coding
243. (AGGG)31246110444611055Coding
244. (TTAA)31246511634651174Non coding
245. (AGC)41246633014663312Coding
246. (GGGGGT)31846676094667626Coding
247. (AAAC)31246914384691449Coding-Non coding
248. (AAAT)31247030264703037Coding
249. (GAC)41247049714704982Coding
250. (TCGTCA)31847180794718096Coding
251. (AGA)41247258334725844Coding
252. (GCC)41247271554727166Coding
253. (TTGC)31247375074737518Coding
254. (ATCG)31247473364747347Coding
255. (GTGG)31247788134778824Non coding
256. (TC)61247853614785372Coding
257. (TAGA)31248127134812724Non coding
258. (TAA)41248471444847155Coding
259. (TTAT)31248851254885136Coding
260. (CCCAAA)31848894434889460Coding
261. (ACTG)31249045304904541Coding-Non coding
262. (ACC)41249143784914389Coding
263. (TTGG)31249181484918159Coding
264. (CGA)41249301764930187Coding
265. (GTGG)31249439104943921Non coding
266. (ATT)41249843244984335Coding
267. (GCG)41249924054992416Coding
268. (GAA)41250148765014887Coding
269. (TTAT)31250930915093102Coding-Non coding
270. (TTA)41251151425115153Coding
271. (ACA)41251574505157461Coding
272. (TGAT)31251629415162952Non coding
273. (AAT)41251700605170071Coding
274. (CAATT)31552197515219765Non coding
275. (CAC)51552402385240252Coding
276. (AAGATG)31853327025332719Coding
277. (CCTGAT)31853498855349902Coding
278. (GTGG)31253690745369085Non coding
279. (GCC)41253764035376414Coding
280. (GGT)41253824335382444Coding
281. (GGT)41253839445383955Coding
282. (ACC)72154256345425654Coding
283. (CTTC)31254411105441121Coding
284. (GAT)41254428965442907Coding
285. (CGG)41254732135473224Coding
286. (TGATCA)31855331865533203Coding
287. (GAA)41255585585558569Coding
288. (AAT)41255608325560843Coding
289. (TTTC)31255773195577330Coding
290. (GGC)41255965095596520Coding
291. (ATA)41256020265602037Coding
292. (GGA)41256207245620735Coding
293. (GAT)41256219455621956Coding
294. (CCAC)31256421995642210Non coding
295. (CAAT)31256639365663947Coding
296. (CAAT)31256667605666771Coding
297. (CGC)41256727655672776Coding
298. (GTC)41257191515719162Coding
299. (CAACC)31557637055763719Non coding
300. (GCC)41257674835767494Coding
301. (TAA)41257793025779313Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.