CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.69 kb   Average length of SSR  : 12.48 bp
Coding      : 2731     Non-Coding           : 659   Coding and Non-Coding : 66
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CAGAA144711847131Coding
2. GATTT159890398917Coding
3. GAAAA16162730162745Coding
4. TCCTA20166503166522Non coding
5. ATTAA15242064242078Non coding
6. GTTTA14259530259543Coding
7. CCTTT14263333263346Coding
8. AACAA15276508276522Non coding
9. TCAAC14288053288066Coding
10. AATTC15306624306638Coding
11. AAAAG14308064308077Coding
12. ACGCA14376022376035Coding
13. ATCAC14439399439412Coding
14. ATTTA15483573483587Coding
15. CCATC16544328544343Coding
16. TAAAT14568280568293Coding
17. CCCTA14577208577221Coding
18. ACAGG19585220585238Coding
19. CAAAT14647302647315Coding
20. TTTAA15692934692948Coding
21. TAATT15706812706826Coding
22. CAAAT14745920745933Coding
23. AGGAA14805726805739Coding
24. GGCTT14843294843307Non coding
25. CGATC14868680868693Coding
26. TCGGT14891673891686Coding
27. TCGGT14900643900656Coding
28. TCGGT14926078926091Coding
29. TCTGG14940926940939Coding
30. TGAAA15941306941320Non coding
31. TGTTT1510138251013839Coding
32. TGGGG1510246771024691Coding
33. GAAAA1910315871031605Coding
34. CAGTT1510737491073763Non coding
35. TTGCC1511731191173133Coding
36. TTAGA1411889851188998Coding
37. CTGGC1512674291267443Coding
38. GGAGA1512755561275570Coding
39. GCTAG1513751081375122Coding
40. ATCTT1513855151385529Non coding
41. CATTA1513911301391144Non coding
42. AGCCA1613989911399006Coding
43. GTCCC1514218961421910Coding
44. CTGAT1414503171450330Coding
45. ATGTT1514582221458236Coding
46. TGTGA1414713291471342Non coding
47. AGTAG1414744331474446Coding
48. ATGTG1515185551518569Coding
49. AATTT1515478741547888Coding
50. TTTAC1515494721549486Non coding
51. TGGTT1915920721592090Coding
52. AGAGT1516596771659691Coding
53. TCTCC1517801641780178Coding
54. CAATA1517976661797680Non coding
55. ATGTG1519669531966967Coding
56. AAAAC1919697591969777Non coding
57. GGGGT1419820971982110Coding
58. TTCAG1420026122002625Non coding
59. CCCCA1520292182029232Non coding
60. ATTTA1420373882037401Coding
61. ATCGG1421218372121850Coding
62. TAATC1521371382137152Coding
63. AAACA1421590902159103Non coding
64. GTTAA1621727322172747Non coding
65. ATTGA1421798102179823Coding
66. TAATC1621933182193333Coding
67. AGTCT1421933942193407Coding
68. TAGTT1522311772231191Coding
69. AGGTT1422440472244060Coding
70. CAAAT1422919442291957Coding
71. TAAAT1423057212305734Coding
72. CAATG1423236252323638Coding
73. TAGAA1423667412366754Coding
74. TTAGT1523798162379830Coding
75. AAAGA1423853942385407Non coding
76. AAATC1425001842500197Coding
77. AAATC1525235112523525Coding
78. CTGTT1425380362538049Coding
79. ACTCG1426469292646942Coding
80. CGGGA1426609302660943Coding
81. TAATT1527866272786641Coding
82. TCAAC1428737632873776Coding
83. CCGTG1429372922937305Coding
84. AATAA1529723412972355Coding
85. TTCCC1431356443135657Coding
86. CAAAT1431480293148042Non coding
87. AGAAA1932127503212768Coding
88. AATAA1433101383310151Non coding
89. TTTGA1434600693460082Coding
90. ACAAA1534992833499297Coding
91. ATTAG1535378413537855Coding
92. AGGAA1535479303547944Coding
93. AAAAC1436022593602272Non coding
94. GGTAA1536380423638056Non coding
95. GCTCT1936381923638210Non coding
96. GGTTT1936795863679604Coding
97. GAGTC1436828933682906Coding
98. ATGTG1537164213716435Coding
99. ACATT1437328983732911Coding
100. GCTGT1437389483738961Coding
101. CTTTA1537639473763961Non coding
102. AATTC1437981403798153Coding
103. CCTTT1439083353908348Coding
104. TAAGT1540034634003477Coding
105. AATTA1440062854006298Coding
106. CCAAA1540091354009149Non coding
107. AGATA1540116344011648Coding
108. AATTG1440123454012358Coding
109. TTAAT1540927384092752Coding
110. AATTA1541213014121315Coding
111. CAAAT1441507884150801Coding
112. TTTGG1541647834164797Coding
113. GGGGT1442007924200805Coding
114. TTCCC1443466044346617Coding
115. CAAAT1444072374407250Coding
116. CCATT1444706454470658Non coding
117. CCCGT1444857704485783Coding
118. ACACC1945028974502915Coding
119. CGGGT1445348404534853Coding
120. TGTGT1545811964581210Non coding
121. GGATC1445947064594719Non coding
122. CAAAT1446376124637625Coding
123. GCTTG1446650754665088Coding
124. GGGGA1547101104710124Coding
125. GTGCA1447295954729608Coding
126. CAAAT1448256884825701Coding
127. AGATT1548290014829015Coding
128. ATCGG1448828284882841Non coding
129. GTTAA1449319824931995Non coding
130. AGTGG1449660924966105Coding
131. AATCA1450355705035583Coding
132. TTTTG1450651485065161Coding
133. CAAAT1450750885075101Coding
134. AAGAC1451066265106639Coding
135. CCGCA1451468775146890Coding
136. GGATG1551886605188674Coding
137. TATAA1451998475199860Coding
138. ATTTA1452018035201816Non coding
139. ATCCA1453418845341897Coding
140. CAAAT1453468555346868Coding
141. TCGGT1453514615351474Coding
142. CTTTT1553679185367932Coding
143. GTCAT1553878575387871Coding-Non coding
144. GTCAT1553900325390046Coding-Non coding
145. TTTCT1554327585432772Coding-Non coding
146. CGACG1654875475487562Coding
147. CGATG1554924785492492Coding
148. TGTTC1455307285530741Coding
149. TAAAT1455881255588138Coding
150. ATCCG1556228905622904Coding
151. AAACT1557035415703555Coding
152. AAAAT1557212025721216Coding
153. AAAGT1457789005778913Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.