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Organism:
Microcystis aeruginosa NIES-843
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(NC_010296 , 5842796 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
301
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Density of SSR
:
1SSR/
19.41
kb
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Average length of SSR
:
13.17
bp
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Coding
:
229
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Non-Coding
:
65
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Coding and Non-Coding
:
7
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (CCA)4 | 12 | 66246 | 66257 | Coding |
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2.
| (AGA)5 | 15 | 95637 | 95651 | Coding |
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3.
| (CCA)4 | 12 | 195186 | 195197 | Coding |
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4.
| (TAA)4 | 12 | 199956 | 199967 | Coding |
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5.
| (GCC)4 | 12 | 212815 | 212826 | Coding |
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6.
| (ATC)4 | 12 | 229443 | 229454 | Coding |
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7.
| (GCA)4 | 12 | 236901 | 236912 | Coding |
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8.
| (AAT)4 | 12 | 286578 | 286589 | Coding |
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9.
| (TTG)4 | 12 | 337990 | 338001 | Coding |
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10.
| (TGG)4 | 12 | 487398 | 487409 | Coding |
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11.
| (TGG)4 | 12 | 535400 | 535411 | Coding |
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12.
| (GCC)4 | 12 | 541478 | 541489 | Coding |
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13.
| (CGC)4 | 12 | 578868 | 578879 | Coding |
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14.
| (TTC)4 | 12 | 591935 | 591946 | Coding |
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15.
| (TCC)5 | 15 | 620311 | 620325 | Coding |
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16.
| (TAC)4 | 12 | 671422 | 671433 | Coding |
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17.
| (ATT)4 | 12 | 685420 | 685431 | Coding |
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18.
| (CGC)4 | 12 | 794705 | 794716 | Coding |
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19.
| (GGT)4 | 12 | 832027 | 832038 | Coding |
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20.
| (GCG)4 | 12 | 960330 | 960341 | Coding |
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21.
| (TAA)5 | 15 | 1012586 | 1012600 | Coding |
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22.
| (TGG)4 | 12 | 1097615 | 1097626 | Coding |
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23.
| (ACC)4 | 12 | 1179920 | 1179931 | Coding |
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24.
| (TCT)4 | 12 | 1277119 | 1277130 | Coding |
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25.
| (GAG)4 | 12 | 1333965 | 1333976 | Non coding |
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26.
| (GAA)4 | 12 | 1343930 | 1343941 | Coding |
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27.
| (GTG)4 | 12 | 1363712 | 1363723 | Coding |
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28.
| (CGT)4 | 12 | 1364633 | 1364644 | Coding |
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29.
| (CGT)6 | 18 | 1364825 | 1364842 | Coding |
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30.
| (GTT)4 | 12 | 1380290 | 1380301 | Coding |
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31.
| (GGC)4 | 12 | 1392152 | 1392163 | Coding |
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32.
| (CCA)4 | 12 | 1393590 | 1393601 | Coding |
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33.
| (TAA)4 | 12 | 1462192 | 1462203 | Coding |
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34.
| (GAA)4 | 12 | 1533591 | 1533602 | Coding |
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35.
| (TCT)4 | 12 | 1540519 | 1540530 | Coding |
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36.
| (TCC)4 | 12 | 1557359 | 1557370 | Coding |
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37.
| (TAC)4 | 12 | 1572950 | 1572961 | Non coding |
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38.
| (CCA)4 | 12 | 1574002 | 1574013 | Coding |
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39.
| (CAG)4 | 12 | 1596042 | 1596053 | Coding |
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40.
| (GCC)4 | 12 | 1600435 | 1600446 | Coding |
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41.
| (GTG)4 | 12 | 1630925 | 1630936 | Coding |
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42.
| (TCG)4 | 12 | 1742723 | 1742734 | Coding |
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43.
| (ACG)4 | 12 | 1756015 | 1756026 | Coding |
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44.
| (ACC)4 | 12 | 1791974 | 1791985 | Coding |
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45.
| (TGG)4 | 12 | 1810336 | 1810347 | Coding |
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46.
| (TGG)4 | 12 | 1811169 | 1811180 | Coding |
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47.
| (TTG)4 | 12 | 1826993 | 1827004 | Coding |
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48.
| (TAA)4 | 12 | 1851986 | 1851997 | Coding |
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49.
| (GTG)4 | 12 | 1861716 | 1861727 | Coding |
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50.
| (ACC)4 | 12 | 1903115 | 1903126 | Coding |
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51.
| (ATT)4 | 12 | 1945563 | 1945574 | Coding |
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52.
| (CAC)4 | 12 | 1955692 | 1955703 | Coding |
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53.
| (GCC)4 | 12 | 2026098 | 2026109 | Coding |
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54.
| (GCG)5 | 15 | 2051214 | 2051228 | Coding |
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55.
| (TTA)4 | 12 | 2193795 | 2193806 | Coding |
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56.
| (GTG)4 | 12 | 2218043 | 2218054 | Coding |
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57.
| (TTA)4 | 12 | 2263898 | 2263909 | Non coding |
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58.
| (CGC)4 | 12 | 2290798 | 2290809 | Coding |
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59.
| (TGG)5 | 15 | 2321826 | 2321840 | Coding |
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60.
| (CTT)4 | 12 | 2496160 | 2496171 | Coding |
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61.
| (TGG)4 | 12 | 2546770 | 2546781 | Coding |
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62.
| (GAG)4 | 12 | 2592826 | 2592837 | Coding |
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63.
| (GGA)4 | 12 | 2594610 | 2594621 | Coding |
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64.
| (TTA)4 | 12 | 2606694 | 2606705 | Coding |
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65.
| (TGG)4 | 12 | 2615061 | 2615072 | Coding |
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66.
| (CCA)4 | 12 | 2700261 | 2700272 | Coding |
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67.
| (CAA)4 | 12 | 2701060 | 2701071 | Coding |
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68.
| (ATG)4 | 12 | 2751812 | 2751823 | Coding |
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69.
| (TAA)4 | 12 | 2840623 | 2840634 | Coding |
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70.
| (TGA)4 | 12 | 2845537 | 2845548 | Coding |
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71.
| (TGG)4 | 12 | 3022926 | 3022937 | Coding |
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72.
| (AAT)4 | 12 | 3044690 | 3044701 | Coding |
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73.
| (ATT)4 | 12 | 3150172 | 3150183 | Coding |
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74.
| (ATT)4 | 12 | 3176192 | 3176203 | Coding |
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75.
| (TCG)4 | 12 | 3183049 | 3183060 | Coding |
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76.
| (GCC)4 | 12 | 3195817 | 3195828 | Coding |
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77.
| (CAA)4 | 12 | 3219680 | 3219691 | Coding |
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78.
| (TGG)4 | 12 | 3241160 | 3241171 | Coding |
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79.
| (ATT)4 | 12 | 3390543 | 3390554 | Coding |
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80.
| (AGA)4 | 12 | 3405948 | 3405959 | Coding |
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81.
| (GTT)4 | 12 | 3496364 | 3496375 | Coding |
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82.
| (GGC)4 | 12 | 3507140 | 3507151 | Coding |
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83.
| (GTG)4 | 12 | 3554792 | 3554803 | Coding |
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84.
| (GGC)4 | 12 | 3565820 | 3565831 | Coding |
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85.
| (TTG)4 | 12 | 3687056 | 3687067 | Coding |
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86.
| (GTA)4 | 12 | 3715667 | 3715678 | Coding |
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87.
| (TGC)4 | 12 | 3757143 | 3757154 | Coding |
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88.
| (CGG)4 | 12 | 3779666 | 3779677 | Coding |
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89.
| (AAG)4 | 12 | 3789034 | 3789045 | Coding |
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90.
| (GGC)4 | 12 | 3951377 | 3951388 | Coding |
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91.
| (GGC)4 | 12 | 3958994 | 3959005 | Coding |
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92.
| (CAG)4 | 12 | 4032961 | 4032972 | Coding |
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93.
| (TCG)4 | 12 | 4046812 | 4046823 | Coding |
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94.
| (TTA)4 | 12 | 4122961 | 4122972 | Coding |
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95.
| (GGC)4 | 12 | 4180618 | 4180629 | Coding |
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96.
| (GGC)4 | 12 | 4181919 | 4181930 | Coding |
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97.
| (TGG)4 | 12 | 4194137 | 4194148 | Coding |
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98.
| (GAA)4 | 12 | 4211389 | 4211400 | Coding |
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99.
| (GCG)4 | 12 | 4222590 | 4222601 | Coding |
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100.
| (CAG)4 | 12 | 4230531 | 4230542 | Coding |
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101.
| (GAA)4 | 12 | 4335395 | 4335406 | Coding |
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102.
| (TGG)4 | 12 | 4353109 | 4353120 | Coding |
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103.
| (GTC)4 | 12 | 4355073 | 4355084 | Coding |
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104.
| (TTC)4 | 12 | 4516385 | 4516396 | Coding |
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105.
| (AGC)4 | 12 | 4663301 | 4663312 | Coding |
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106.
| (GAC)4 | 12 | 4704971 | 4704982 | Coding |
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107.
| (AGA)4 | 12 | 4725833 | 4725844 | Coding |
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108.
| (GCC)4 | 12 | 4727155 | 4727166 | Coding |
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109.
| (TAA)4 | 12 | 4847144 | 4847155 | Coding |
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110.
| (ACC)4 | 12 | 4914378 | 4914389 | Coding |
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111.
| (CGA)4 | 12 | 4930176 | 4930187 | Coding |
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112.
| (ATT)4 | 12 | 4984324 | 4984335 | Coding |
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113.
| (GCG)4 | 12 | 4992405 | 4992416 | Coding |
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114.
| (GAA)4 | 12 | 5014876 | 5014887 | Coding |
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115.
| (TTA)4 | 12 | 5115142 | 5115153 | Coding |
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116.
| (ACA)4 | 12 | 5157450 | 5157461 | Coding |
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117.
| (AAT)4 | 12 | 5170060 | 5170071 | Coding |
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118.
| (CAC)5 | 15 | 5240238 | 5240252 | Coding |
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119.
| (GCC)4 | 12 | 5376403 | 5376414 | Coding |
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120.
| (GGT)4 | 12 | 5382433 | 5382444 | Coding |
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121.
| (GGT)4 | 12 | 5383944 | 5383955 | Coding |
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122.
| (ACC)7 | 21 | 5425634 | 5425654 | Coding |
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123.
| (GAT)4 | 12 | 5442896 | 5442907 | Coding |
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124.
| (CGG)4 | 12 | 5473213 | 5473224 | Coding |
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125.
| (GAA)4 | 12 | 5558558 | 5558569 | Coding |
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126.
| (AAT)4 | 12 | 5560832 | 5560843 | Coding |
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127.
| (GGC)4 | 12 | 5596509 | 5596520 | Coding |
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128.
| (ATA)4 | 12 | 5602026 | 5602037 | Coding |
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129.
| (GGA)4 | 12 | 5620724 | 5620735 | Coding |
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130.
| (GAT)4 | 12 | 5621945 | 5621956 | Coding |
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131.
| (CGC)4 | 12 | 5672765 | 5672776 | Coding |
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132.
| (GTC)4 | 12 | 5719151 | 5719162 | Coding |
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133.
| (GCC)4 | 12 | 5767483 | 5767494 | Coding |
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134.
| (TAA)4 | 12 | 5779302 | 5779313 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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