CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 301     Density of SSR      : 1SSR/ 19.41 kb   Average length of SSR  : 13.17 bp
Coding      : 229     Non-Coding           : 65   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCA)4126624666257Coding
2. (AGA)5159563795651Coding
3. (CCA)412195186195197Coding
4. (TAA)412199956199967Coding
5. (GCC)412212815212826Coding
6. (ATC)412229443229454Coding
7. (GCA)412236901236912Coding
8. (AAT)412286578286589Coding
9. (TTG)412337990338001Coding
10. (TGG)412487398487409Coding
11. (TGG)412535400535411Coding
12. (GCC)412541478541489Coding
13. (CGC)412578868578879Coding
14. (TTC)412591935591946Coding
15. (TCC)515620311620325Coding
16. (TAC)412671422671433Coding
17. (ATT)412685420685431Coding
18. (CGC)412794705794716Coding
19. (GGT)412832027832038Coding
20. (GCG)412960330960341Coding
21. (TAA)51510125861012600Coding
22. (TGG)41210976151097626Coding
23. (ACC)41211799201179931Coding
24. (TCT)41212771191277130Coding
25. (GAG)41213339651333976Non coding
26. (GAA)41213439301343941Coding
27. (GTG)41213637121363723Coding
28. (CGT)41213646331364644Coding
29. (CGT)61813648251364842Coding
30. (GTT)41213802901380301Coding
31. (GGC)41213921521392163Coding
32. (CCA)41213935901393601Coding
33. (TAA)41214621921462203Coding
34. (GAA)41215335911533602Coding
35. (TCT)41215405191540530Coding
36. (TCC)41215573591557370Coding
37. (TAC)41215729501572961Non coding
38. (CCA)41215740021574013Coding
39. (CAG)41215960421596053Coding
40. (GCC)41216004351600446Coding
41. (GTG)41216309251630936Coding
42. (TCG)41217427231742734Coding
43. (ACG)41217560151756026Coding
44. (ACC)41217919741791985Coding
45. (TGG)41218103361810347Coding
46. (TGG)41218111691811180Coding
47. (TTG)41218269931827004Coding
48. (TAA)41218519861851997Coding
49. (GTG)41218617161861727Coding
50. (ACC)41219031151903126Coding
51. (ATT)41219455631945574Coding
52. (CAC)41219556921955703Coding
53. (GCC)41220260982026109Coding
54. (GCG)51520512142051228Coding
55. (TTA)41221937952193806Coding
56. (GTG)41222180432218054Coding
57. (TTA)41222638982263909Non coding
58. (CGC)41222907982290809Coding
59. (TGG)51523218262321840Coding
60. (CTT)41224961602496171Coding
61. (TGG)41225467702546781Coding
62. (GAG)41225928262592837Coding
63. (GGA)41225946102594621Coding
64. (TTA)41226066942606705Coding
65. (TGG)41226150612615072Coding
66. (CCA)41227002612700272Coding
67. (CAA)41227010602701071Coding
68. (ATG)41227518122751823Coding
69. (TAA)41228406232840634Coding
70. (TGA)41228455372845548Coding
71. (TGG)41230229263022937Coding
72. (AAT)41230446903044701Coding
73. (ATT)41231501723150183Coding
74. (ATT)41231761923176203Coding
75. (TCG)41231830493183060Coding
76. (GCC)41231958173195828Coding
77. (CAA)41232196803219691Coding
78. (TGG)41232411603241171Coding
79. (ATT)41233905433390554Coding
80. (AGA)41234059483405959Coding
81. (GTT)41234963643496375Coding
82. (GGC)41235071403507151Coding
83. (GTG)41235547923554803Coding
84. (GGC)41235658203565831Coding
85. (TTG)41236870563687067Coding
86. (GTA)41237156673715678Coding
87. (TGC)41237571433757154Coding
88. (CGG)41237796663779677Coding
89. (AAG)41237890343789045Coding
90. (GGC)41239513773951388Coding
91. (GGC)41239589943959005Coding
92. (CAG)41240329614032972Coding
93. (TCG)41240468124046823Coding
94. (TTA)41241229614122972Coding
95. (GGC)41241806184180629Coding
96. (GGC)41241819194181930Coding
97. (TGG)41241941374194148Coding
98. (GAA)41242113894211400Coding
99. (GCG)41242225904222601Coding
100. (CAG)41242305314230542Coding
101. (GAA)41243353954335406Coding
102. (TGG)41243531094353120Coding
103. (GTC)41243550734355084Coding
104. (TTC)41245163854516396Coding
105. (AGC)41246633014663312Coding
106. (GAC)41247049714704982Coding
107. (AGA)41247258334725844Coding
108. (GCC)41247271554727166Coding
109. (TAA)41248471444847155Coding
110. (ACC)41249143784914389Coding
111. (CGA)41249301764930187Coding
112. (ATT)41249843244984335Coding
113. (GCG)41249924054992416Coding
114. (GAA)41250148765014887Coding
115. (TTA)41251151425115153Coding
116. (ACA)41251574505157461Coding
117. (AAT)41251700605170071Coding
118. (CAC)51552402385240252Coding
119. (GCC)41253764035376414Coding
120. (GGT)41253824335382444Coding
121. (GGT)41253839445383955Coding
122. (ACC)72154256345425654Coding
123. (GAT)41254428965442907Coding
124. (CGG)41254732135473224Coding
125. (GAA)41255585585558569Coding
126. (AAT)41255608325560843Coding
127. (GGC)41255965095596520Coding
128. (ATA)41256020265602037Coding
129. (GGA)41256207245620735Coding
130. (GAT)41256219455621956Coding
131. (CGC)41256727655672776Coding
132. (GTC)41257191515719162Coding
133. (GCC)41257674835767494Coding
134. (TAA)41257793025779313Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.