CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Microcystis aeruginosa NIES-843 (NC_010296 5842796 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 301     Density of SSR      : 1SSR/ 19.41 kb   Average length of SSR  : 13.17 bp
Coding      : 229     Non-Coding           : 65   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 4 134 116 8 37 301
IMPERFECT 5 121 1634 1436 153 107 3456
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTG)3127989279903Coding
2. (AAAT)312100349100360Coding
3. (GATC)312153940153951Coding
4. (GTGG)312159989160000Non coding
5. (TCGC)312161238161249Non coding
6. (TGAC)312177257177268Coding
7. (GTGG)312194260194271Non coding
8. (CCAA)312262255262266Coding
9. (TTTA)312271751271762Coding-Non coding
10. (CAAT)312310739310750Coding
11. (AGTT)520316588316607Non coding
12. (CCAC)312347102347113Non coding
13. (CCAC)312485530485541Non coding
14. (GTGG)312522536522547Non coding
15. (CCAC)312542453542464Non coding
16. (CCAC)312587728587739Non coding
17. (TAAC)312597677597688Non coding
18. (TTTC)312710365710376Non coding
19. (AATT)312711667711678Coding
20. (TTTA)312736162736173Non coding
21. (CCAA)312943482943493Coding
22. (TCGA)312978272978283Coding
23. (ACCT)312983993984004Non coding
24. (ACCA)31210454731045484Coding
25. (TAGT)31211463581146369Non coding
26. (CCAC)31211643041164315Non coding
27. (GATA)31213242471324258Non coding
28. (AAAG)31214593021459313Coding
29. (GTGC)31214829531482964Coding
30. (TATT)31215275741527585Coding
31. (ATTG)31215334641533475Non coding
32. (GATC)31215837841583795Coding
33. (TCGG)31216429571642968Coding
34. (CCAC)31216465051646516Non coding
35. (GACC)31216509061650917Coding
36. (CCAC)31216564071656418Non coding
37. (TCAA)31216799961680007Coding
38. (GTGG)31217254301725441Non coding
39. (ATAG)31217451301745141Non coding
40. (TAAG)31217972721797283Non coding
41. (TTCA)31218293391829350Non coding
42. (ATCG)52019371141937133Coding
43. (TTCT)31219399431939954Coding
44. (GTGG)31219496911949702Non coding
45. (TTTG)31219501941950205Coding
46. (TTAT)31219556051955616Non coding
47. (AATT)31220947862094797Coding
48. (TTAT)62421261502126173Non coding
49. (CTTT)31221682642168275Coding
50. (ACTA)31221806882180699Non coding
51. (TTGA)31221852622185273Coding
52. (GTGG)31222037582203769Non coding
53. (AATT)31222880642288075Coding
54. (CCAC)31224976012497612Non coding
55. (CCAC)31225005652500576Non coding
56. (GATT)31225118992511910Coding
57. (ATAG)31226333332633344Coding-Non coding
58. (ATTG)31226559572655968Coding-Non coding
59. (TGCT)31226907942690805Coding
60. (GAAA)31227117292711740Non coding
61. (TAAT)31227233602723371Coding-Non coding
62. (AATT)31227497352749746Coding
63. (TAAA)31227765632776574Non coding
64. (ATCG)31227923212792332Coding
65. (ATTT)31228007822800793Coding
66. (CCAC)31229036952903706Non coding
67. (TTTC)31229165932916604Coding
68. (AATA)31229943962994407Coding
69. (TTTG)31230267043026715Coding
70. (CCAC)31230682833068294Non coding
71. (GGAA)31230966613096672Coding
72. (GCAA)31231686473168658Coding
73. (CTCC)31232511023251113Non coding
74. (TCAA)31232773083277319Non coding
75. (AGTT)31234920323492043Coding
76. (CAAT)31235602613560272Coding
77. (AAAC)31235769333576944Coding
78. (TCAA)31236876863687697Coding
79. (CCAC)31237239133723924Non coding
80. (TTTC)31237645903764601Non coding
81. (ATTT)31238647493864760Coding
82. (AGCG)31238913033891314Coding
83. (CCAA)31239074263907437Coding
84. (CCAC)31239207573920768Non coding
85. (GATC)31239358043935815Coding
86. (TCCT)31241254744125485Coding
87. (AATA)31241473824147393Coding
88. (GTGG)31242118464211857Non coding
89. (GTGG)31242308924230903Non coding
90. (ATCG)31242329974233008Coding
91. (GATA)31242439714243982Non coding
92. (ATAA)31242670644267075Coding
93. (CCAC)31243540354354046Non coding
94. (TTAG)31244125444412555Non coding
95. (TACC)31244551274455138Coding
96. (GTGG)31246047404604751Coding
97. (AGGG)31246110444611055Coding
98. (TTAA)31246511634651174Non coding
99. (AAAC)31246914384691449Coding-Non coding
100. (AAAT)31247030264703037Coding
101. (TTGC)31247375074737518Coding
102. (ATCG)31247473364747347Coding
103. (GTGG)31247788134778824Non coding
104. (TAGA)31248127134812724Non coding
105. (TTAT)31248851254885136Coding
106. (ACTG)31249045304904541Coding-Non coding
107. (TTGG)31249181484918159Coding
108. (GTGG)31249439104943921Non coding
109. (TTAT)31250930915093102Coding-Non coding
110. (TGAT)31251629415162952Non coding
111. (GTGG)31253690745369085Non coding
112. (CTTC)31254411105441121Coding
113. (TTTC)31255773195577330Coding
114. (CCAC)31256421995642210Non coding
115. (CAAT)31256639365663947Coding
116. (CAAT)31256667605666771Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.