CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc azollae 0708 (NC_014248 5354701 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 314     Density of SSR      : 1SSR/ 17.05 kb   Average length of SSR  : 12.84 bp
Coding      : 126     Non-Coding           : 183   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 8 104 176 13 11 314
IMPERFECT 7 259 2042 1636 197 108 4249
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATG)31290399050Non coding
2. (AATG)3121505115062Non coding
3. (CTT)4123234132352Coding
4. (ACTC)3125224152252Non coding
5. (CAC)4125578255793Coding
6. (TATG)3127052470535Non coding
7. (CATT)3129901099021Non coding
8. (AATG)312115543115554Non coding
9. (AGAACC)318217424217441Non coding
10. (ATAA)312238399238410Non coding
11. (CCTA)312245945245956Non coding
12. (CTAA)312246618246629Non coding
13. (CATT)312264018264029Non coding
14. (ACA)412280023280034Coding
15. (CTG)412297460297471Coding
16. (CATT)312302736302747Non coding
17. (TTAA)312305308305319Non coding
18. (CCA)412318800318811Coding
19. (CATT)312348100348111Non coding
20. (CAT)412357499357510Coding
21. (AATG)312396470396481Non coding
22. (AATG)312411197411208Non coding
23. (GCA)412415748415759Coding
24. (GAA)515444427444441Non coding
25. (AATG)312467128467139Non coding
26. (CTTT)312491046491057Non coding
27. (TTAT)312497370497381Non coding
28. (AATC)312508030508041Non coding
29. (TTTA)312516969516980Non coding
30. (AATG)312537024537035Non coding
31. (TTCA)312540068540079Non coding
32. (AATT)312560068560079Coding
33. (CATT)312568117568128Non coding
34. (GTT)412581681581692Coding
35. (AGC)412605850605861Coding
36. (ATTA)312619521619532Non coding
37. (TGAC)312622238622249Non coding
38. (TGAC)312657349657360Coding
39. (AACC)312702747702758Non coding
40. (GCA)412717773717784Coding
41. (TGC)412719617719628Coding
42. (TCAA)312727179727190Non coding
43. (TTG)515735174735188Coding
44. (ACC)412753785753796Coding
45. (AATG)312792046792057Non coding
46. (GTAA)312793600793611Non coding
47. (TTAA)312806389806400Non coding
48. (TACT)312815599815610Non coding
49. (TTGGT)315832517832531Non coding
50. (CATT)312852005852016Non coding
51. (AATG)312888518888529Coding
52. (AAAG)312933397933408Non coding
53. (TAA)412940023940034Coding
54. (GATTT)315940272940286Coding
55. (ATC)412946098946109Coding
56. (GCT)412959557959568Coding
57. (T)1414960123960136Non coding
58. (CATT)312963447963458Non coding
59. (AACCA)315978943978957Non coding
60. (TA)816982754982769Non coding
61. (TA)612982778982789Non coding
62. (CATT)31210027771002788Non coding
63. (TTTA)31210115561011567Non coding
64. (AAAT)31210385461038557Non coding
65. (CAAC)31210641011064112Non coding
66. (TA)61210643581064369Non coding
67. (ATC)113310772831077315Coding
68. (ATC)41210773461077357Coding
69. (CAT)41211101011110112Coding
70. (TTAT)31211463041146315Coding
71. (AATC)31211564181156429Non coding
72. (ATTT)31211876461187657Coding
73. (AATG)31212211061221117Non coding
74. (GCA)41212278251227836Coding
75. (CACC)31212418641241875Non coding
76. (GAA)41212863791286390Coding
77. (ATTTA)31513230131323027Non coding
78. (AGC)51513269401326954Coding
79. (GCT)41213438141343825Coding
80. (GCT)41214084481408459Non coding
81. (CCAT)31214231081423119Coding-Non coding
82. (TCA)51514283351428349Coding
83. (TAAA)31214730161473027Coding
84. (CAC)41215121451512156Coding
85. (CATT)31215374931537504Non coding
86. (CTG)41215627131562724Coding
87. (GCGTG)42015638901563909Coding
88. (GCT)41215717361571747Coding
89. (CA)71415799961580009Non coding
90. (ATTT)31215989571598968Non coding
91. (AATG)31216080031608014Non coding
92. (AGC)41216098191609830Coding
93. (GGTT)31216140521614063Coding
94. (AT)61216211921621203Non coding
95. (ATC)51516274471627461Coding
96. (AATT)31216379211637932Non coding
97. (TGC)41216400641640075Coding
98. (ATTA)31216652441665255Non coding
99. (TATT)31216815441681555Non coding
100. (TTTG)31216818661681877Non coding
101. (ATTG)31216962931696304Non coding
102. (GTA)51517561791756193Non coding
103. (TCTA)31217744221774433Non coding
104. (ATC)41218340361834047Coding
105. (ATTT)31218810651881076Non coding
106. (AATA)31219280881928099Non coding
107. (AGC)51519397171939731Coding
108. (ATG)51519436531943667Coding
109. (TATCA)31519456191945633Coding-Non coding
110. (ACCA)31219509791950990Coding
111. (CAAA)31219590921959103Coding
112. (GTAA)31219710541971065Coding
113. (TATG)31219714531971464Non coding
114. (AATT)31219897441989755Non coding
115. (AACC)31219945191994530Coding
116. (CAC)41220055842005595Coding
117. (GTA)41220072212007232Coding
118. (CCG)41220475952047606Coding
119. (TAAT)31221066522106663Non coding
120. (CATT)31221099522109963Non coding
121. (TGG)41221172402117251Coding
122. (TTATG)63021293662129395Non coding
123. (TTG)51521370442137058Coding
124. (TAT)41221436352143646Non coding
125. (GGAA)31221514442151455Coding
126. (AATG)31221976542197665Non coding
127. (TCAT)31222104982210509Non coding
128. (AAAT)31222346342234645Non coding
129. (CATT)31222837992283810Non coding
130. (ATC)41222949552294966Coding
131. (AATG)31223032552303266Non coding
132. (AATG)31223158772315888Non coding
133. (TAATCA)31823223702322387Non coding
134. (TTAT)31223275782327589Non coding
135. (CATT)31223323382332349Non coding
136. (TACC)31223351972335208Non coding
137. (ATTG)31223454452345456Coding
138. (CATT)31223535472353558Non coding
139. (ATTG)31224410892441100Non coding
140. (AGC)41224461062446117Coding
141. (ATTG)31224505542450565Non coding
142. (CGT)41224857692485780Coding
143. (AATC)31224944152494426Non coding
144. (AGTT)31225051652505176Non coding
145. (CATT)31225103362510347Non coding
146. (CAAAT)31525240362524050Coding
147. (ATAG)31225368572536868Coding
148. (AGTAGC)31825415612541578Coding
149. (AATG)31225512912551302Non coding
150. (AATT)31225561062556117Non coding
151. (AATG)31225586592558670Non coding
152. (CATT)31225630452563056Non coding
153. (GAGC)31225686902568701Coding
154. (CACT)31225689052568916Coding
155. (GAA)41225702022570213Coding
156. (CCAA)31225915142591525Coding
157. (AATG)31225940692594080Non coding
158. (CATT)31226401082640119Non coding
159. (TATT)31226536222653633Non coding
160. (TTAA)31226542722654283Non coding
161. (CAAA)41626598162659831Coding
162. (GTG)41226650652665076Coding
163. (AGTC)31226816192681630Coding
164. (AATG)31226860372686048Non coding
165. (CGT)41227180082718019Coding
166. (TTAG)31227181302718141Coding-Non coding
167. (CATT)31227374812737492Non coding
168. (AGTC)31227422632742274Coding
169. (GCAA)31227436042743615Coding
170. (GAT)51527475982747612Coding
171. (ACTACC)31827838892783906Non coding
172. (CATT)31228017402801751Non coding
173. (CTG)41228209702820981Coding
174. (GGT)41228213232821334Coding
175. (ATT)41228477542847765Coding
176. (TTAA)72828541882854215Non coding
177. (AATG)31228846282884639Non coding
178. (ATT)41228862712886282Non coding
179. (CAA)51528884972888511Coding
180. (TTA)41228885702888581Coding
181. (TTTA)31228924792892490Coding
182. (TGG)41228990442899055Coding
183. (AATC)31229036972903708Non coding
184. (GATT)31229266342926645Coding
185. (AAAT)31229389452938956Non coding
186. (ACTC)31229484342948445Non coding
187. (AACCA)31529792812979295Non coding
188. (TATT)31229899172989928Coding
189. (TA)61230627623062773Non coding
190. (TGC)41230983623098373Coding
191. (AATG)31231019813101992Non coding
192. (AATG)31231390723139083Non coding
193. (AAT)41231493403149351Coding
194. (GAT)41231622303162241Non coding
195. (AATG)31231753043175315Non coding
196. (CCA)51531779693177983Coding
197. (ATTG)31231966813196692Non coding
198. (AATT)31232540173254028Non coding
199. (ATC)41232580963258107Coding
200. (AATC)31232637113263722Non coding
201. (AATG)31232782503278261Non coding
202. (TTTC)31232888183288829Non coding
203. (TAATAT)31833026003302617Non coding
204. (GAT)41233238253323836Coding
205. (AGT)41233339483333959Non coding
206. (AAAT)31233657843365795Non coding
207. (GCGTG)31534103253410339Non coding
208. (GCT)41234261813426192Coding
209. (TGC)41234336713433682Coding
210. (TAC)41234478673447878Non coding
211. (AATT)31234493643449375Non coding
212. (ATC)41234767013476712Coding
213. (AATG)31235041073504118Non coding
214. (AATT)31235198023519813Non coding
215. (ATTG)31235236563523667Non coding
216. (ATAA)31235384603538471Coding
217. (TCAA)31235457013545712Non coding
218. (TAAA)31235476133547624Non coding
219. (AATG)31235517833551794Non coding
220. (CAG)41235590193559030Coding
221. (TTGG)31235742103574221Coding
222. (AATA)31236155213615532Non coding
223. (TAAT)31236194873619498Non coding
224. (AAT)41236198173619828Non coding
225. (AAAC)31236210563621067Non coding
226. (TATT)31236264733626484Coding
227. (CAAT)41636675613667576Non coding
228. (CATT)31236770283677039Non coding
229. (TACT)31236789253678936Non coding
230. (TGGTGC)31836924723692489Non coding
231. (CATT)31237023573702368Non coding
232. (TGGT)31237308883730899Non coding
233. (GCA)41237828563782867Coding
234. (AATG)31237958353795846Non coding
235. (AT)142838119713811998Non coding
236. (AGA)41238944283894439Coding
237. (TGCT)31239008213900832Non coding
238. (GGT)51539965493996563Coding
239. (TTC)41240045614004572Non coding
240. (TAAT)31240400124040023Non coding
241. (GAA)41240457354045746Non coding
242. (AATG)31240631034063114Non coding
243. (GAT)41240830044083015Coding
244. (CCA)51541043614104375Coding
245. (ATT)41241204954120506Non coding
246. (AATG)31241250784125089Non coding
247. (ATC)41241266064126617Coding
248. (ATAA)31241315594131570Non coding
249. (GTT)51541398804139894Non coding
250. (CAC)41241519954152006Coding
251. (TCA)41242003764200387Coding
252. (AATA)31242244814224492Non coding
253. (GTAA)31242418994241910Non coding
254. (TTTTA)31542457524245766Non coding
255. (CATT)31242514904251501Non coding
256. (TGA)41242671334267144Coding
257. (AATG)31242757844275795Non coding
258. (AATG)31243076414307652Non coding
259. (GCT)41243163454316356Coding
260. (ATTG)31243420454342056Coding
261. (ACC)41243513504351361Non coding
262. (GCT)41243885244388535Coding
263. (CTA)41244185934418604Coding
264. (AT)132644449384444963Non coding
265. (AGA)51545409564540970Non coding
266. (AAAT)31245430784543089Non coding
267. (TCTA)31245826534582664Non coding
268. (TACC)31246030334603044Non coding
269. (TTC)41246254794625490Non coding
270. (TAGC)31246309164630927Non coding
271. (CCT)41246392074639218Non coding
272. (GTG)61846425164642533Coding
273. (TTCT)31246506694650680Non coding
274. (CACCAT)31846565674656584Coding
275. (GGT)41246718204671831Coding
276. (TGC)41246719334671944Coding
277. (ACTG)31246906474690658Coding
278. (TACA)31246946234694634Non coding
279. (AATG)31246994694699480Non coding
280. (CATT)31247060044706015Non coding
281. (AAAT)31247421934742204Non coding
282. (A)131347814794781491Non coding
283. (CTG)41248101414810152Coding
284. (CTAT)31248223224822333Non coding
285. (TGAAGA)31848359874836004Coding
286. (AAAT)31248703354870346Non coding
287. (TATT)31248755704875581Coding
288. (TAAT)31248982204898231Non coding
289. (TGATG)31549092734909287Non coding
290. (TTTTTG)31849170894917106Coding
291. (AATG)31249273834927394Non coding
292. (AGT)41249378334937844Coding
293. (TGC)41249538124953823Coding
294. (CTGGTG)31849549594954976Coding
295. (CAG)41249783234978334Coding
296. (TGG)41249799984980009Coding
297. (CTGAGG)31849964764996493Coding
298. (TTC)41249985604998571Coding
299. (AAC)41250112625011273Coding
300. (TGG)41250215745021585Coding
301. (TAAT)31250244375024448Coding-Non coding
302. (GCT)41250502325050243Coding
303. (GTT)41250702315070242Coding
304. (AGTT)31250751535075164Non coding
305. (CAA)41250769645076975Coding
306. (CATT)31251090525109063Non coding
307. (AATTT)31551901435190157Non coding
308. (CATT)31252125725212583Non coding
309. (TAAT)31252462375246248Coding-Non coding
310. (ACTT)31252488715248882Non coding
311. (TGGT)31252964525296463Non coding
312. (CATT)31253218305321841Non coding
313. (AATG)31253370095337020Non coding
314. (AAT)41253440815344092Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.