CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc azollae 0708 (NC_014248 5354701 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 314     Density of SSR      : 1SSR/ 17.05 kb   Average length of SSR  : 12.84 bp
Coding      : 126     Non-Coding           : 183   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 8 104 176 13 11 314
IMPERFECT 7 259 2042 1636 197 108 4249
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTT)4123234132352Coding
2. (CAC)4125578255793Coding
3. (ACA)412280023280034Coding
4. (CTG)412297460297471Coding
5. (CCA)412318800318811Coding
6. (CAT)412357499357510Coding
7. (GCA)412415748415759Coding
8. (GAA)515444427444441Non coding
9. (GTT)412581681581692Coding
10. (AGC)412605850605861Coding
11. (GCA)412717773717784Coding
12. (TGC)412719617719628Coding
13. (TTG)515735174735188Coding
14. (ACC)412753785753796Coding
15. (TAA)412940023940034Coding
16. (ATC)412946098946109Coding
17. (GCT)412959557959568Coding
18. (ATC)113310772831077315Coding
19. (ATC)41210773461077357Coding
20. (CAT)41211101011110112Coding
21. (GCA)41212278251227836Coding
22. (GAA)41212863791286390Coding
23. (AGC)51513269401326954Coding
24. (GCT)41213438141343825Coding
25. (GCT)41214084481408459Non coding
26. (TCA)51514283351428349Coding
27. (CAC)41215121451512156Coding
28. (CTG)41215627131562724Coding
29. (GCT)41215717361571747Coding
30. (AGC)41216098191609830Coding
31. (ATC)51516274471627461Coding
32. (TGC)41216400641640075Coding
33. (GTA)51517561791756193Non coding
34. (ATC)41218340361834047Coding
35. (AGC)51519397171939731Coding
36. (ATG)51519436531943667Coding
37. (CAC)41220055842005595Coding
38. (GTA)41220072212007232Coding
39. (CCG)41220475952047606Coding
40. (TGG)41221172402117251Coding
41. (TTG)51521370442137058Coding
42. (TAT)41221436352143646Non coding
43. (ATC)41222949552294966Coding
44. (AGC)41224461062446117Coding
45. (CGT)41224857692485780Coding
46. (GAA)41225702022570213Coding
47. (GTG)41226650652665076Coding
48. (CGT)41227180082718019Coding
49. (GAT)51527475982747612Coding
50. (CTG)41228209702820981Coding
51. (GGT)41228213232821334Coding
52. (ATT)41228477542847765Coding
53. (ATT)41228862712886282Non coding
54. (CAA)51528884972888511Coding
55. (TTA)41228885702888581Coding
56. (TGG)41228990442899055Coding
57. (TGC)41230983623098373Coding
58. (AAT)41231493403149351Coding
59. (GAT)41231622303162241Non coding
60. (CCA)51531779693177983Coding
61. (ATC)41232580963258107Coding
62. (GAT)41233238253323836Coding
63. (AGT)41233339483333959Non coding
64. (GCT)41234261813426192Coding
65. (TGC)41234336713433682Coding
66. (TAC)41234478673447878Non coding
67. (ATC)41234767013476712Coding
68. (CAG)41235590193559030Coding
69. (AAT)41236198173619828Non coding
70. (GCA)41237828563782867Coding
71. (AGA)41238944283894439Coding
72. (GGT)51539965493996563Coding
73. (TTC)41240045614004572Non coding
74. (GAA)41240457354045746Non coding
75. (GAT)41240830044083015Coding
76. (CCA)51541043614104375Coding
77. (ATT)41241204954120506Non coding
78. (ATC)41241266064126617Coding
79. (GTT)51541398804139894Non coding
80. (CAC)41241519954152006Coding
81. (TCA)41242003764200387Coding
82. (TGA)41242671334267144Coding
83. (GCT)41243163454316356Coding
84. (ACC)41243513504351361Non coding
85. (GCT)41243885244388535Coding
86. (CTA)41244185934418604Coding
87. (AGA)51545409564540970Non coding
88. (TTC)41246254794625490Non coding
89. (CCT)41246392074639218Non coding
90. (GTG)61846425164642533Coding
91. (GGT)41246718204671831Coding
92. (TGC)41246719334671944Coding
93. (CTG)41248101414810152Coding
94. (AGT)41249378334937844Coding
95. (TGC)41249538124953823Coding
96. (CAG)41249783234978334Coding
97. (TGG)41249799984980009Coding
98. (TTC)41249985604998571Coding
99. (AAC)41250112625011273Coding
100. (TGG)41250215745021585Coding
101. (GCT)41250502325050243Coding
102. (GTT)41250702315070242Coding
103. (CAA)41250769645076975Coding
104. (AAT)41253440815344092Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.