CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc azollae 0708 (NC_014248 5354701 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 314     Density of SSR      : 1SSR/ 17.05 kb   Average length of SSR  : 12.84 bp
Coding      : 126     Non-Coding           : 183   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 8 104 176 13 11 314
IMPERFECT 7 259 2042 1636 197 108 4249
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATG)31290399050Non coding
2. (AATG)3121505115062Non coding
3. (ACTC)3125224152252Non coding
4. (TATG)3127052470535Non coding
5. (CATT)3129901099021Non coding
6. (AATG)312115543115554Non coding
7. (ATAA)312238399238410Non coding
8. (CCTA)312245945245956Non coding
9. (CTAA)312246618246629Non coding
10. (CATT)312264018264029Non coding
11. (CATT)312302736302747Non coding
12. (TTAA)312305308305319Non coding
13. (CATT)312348100348111Non coding
14. (AATG)312396470396481Non coding
15. (AATG)312411197411208Non coding
16. (AATG)312467128467139Non coding
17. (CTTT)312491046491057Non coding
18. (TTAT)312497370497381Non coding
19. (AATC)312508030508041Non coding
20. (TTTA)312516969516980Non coding
21. (AATG)312537024537035Non coding
22. (TTCA)312540068540079Non coding
23. (AATT)312560068560079Coding
24. (CATT)312568117568128Non coding
25. (ATTA)312619521619532Non coding
26. (TGAC)312622238622249Non coding
27. (TGAC)312657349657360Coding
28. (AACC)312702747702758Non coding
29. (TCAA)312727179727190Non coding
30. (AATG)312792046792057Non coding
31. (GTAA)312793600793611Non coding
32. (TTAA)312806389806400Non coding
33. (TACT)312815599815610Non coding
34. (CATT)312852005852016Non coding
35. (AATG)312888518888529Coding
36. (AAAG)312933397933408Non coding
37. (CATT)312963447963458Non coding
38. (CATT)31210027771002788Non coding
39. (TTTA)31210115561011567Non coding
40. (AAAT)31210385461038557Non coding
41. (CAAC)31210641011064112Non coding
42. (TTAT)31211463041146315Coding
43. (AATC)31211564181156429Non coding
44. (ATTT)31211876461187657Coding
45. (AATG)31212211061221117Non coding
46. (CACC)31212418641241875Non coding
47. (CCAT)31214231081423119Coding-Non coding
48. (TAAA)31214730161473027Coding
49. (CATT)31215374931537504Non coding
50. (ATTT)31215989571598968Non coding
51. (AATG)31216080031608014Non coding
52. (GGTT)31216140521614063Coding
53. (AATT)31216379211637932Non coding
54. (ATTA)31216652441665255Non coding
55. (TATT)31216815441681555Non coding
56. (TTTG)31216818661681877Non coding
57. (ATTG)31216962931696304Non coding
58. (TCTA)31217744221774433Non coding
59. (ATTT)31218810651881076Non coding
60. (AATA)31219280881928099Non coding
61. (ACCA)31219509791950990Coding
62. (CAAA)31219590921959103Coding
63. (GTAA)31219710541971065Coding
64. (TATG)31219714531971464Non coding
65. (AATT)31219897441989755Non coding
66. (AACC)31219945191994530Coding
67. (TAAT)31221066522106663Non coding
68. (CATT)31221099522109963Non coding
69. (GGAA)31221514442151455Coding
70. (AATG)31221976542197665Non coding
71. (TCAT)31222104982210509Non coding
72. (AAAT)31222346342234645Non coding
73. (CATT)31222837992283810Non coding
74. (AATG)31223032552303266Non coding
75. (AATG)31223158772315888Non coding
76. (TTAT)31223275782327589Non coding
77. (CATT)31223323382332349Non coding
78. (TACC)31223351972335208Non coding
79. (ATTG)31223454452345456Coding
80. (CATT)31223535472353558Non coding
81. (ATTG)31224410892441100Non coding
82. (ATTG)31224505542450565Non coding
83. (AATC)31224944152494426Non coding
84. (AGTT)31225051652505176Non coding
85. (CATT)31225103362510347Non coding
86. (ATAG)31225368572536868Coding
87. (AATG)31225512912551302Non coding
88. (AATT)31225561062556117Non coding
89. (AATG)31225586592558670Non coding
90. (CATT)31225630452563056Non coding
91. (GAGC)31225686902568701Coding
92. (CACT)31225689052568916Coding
93. (CCAA)31225915142591525Coding
94. (AATG)31225940692594080Non coding
95. (CATT)31226401082640119Non coding
96. (TATT)31226536222653633Non coding
97. (TTAA)31226542722654283Non coding
98. (CAAA)41626598162659831Coding
99. (AGTC)31226816192681630Coding
100. (AATG)31226860372686048Non coding
101. (TTAG)31227181302718141Coding-Non coding
102. (CATT)31227374812737492Non coding
103. (AGTC)31227422632742274Coding
104. (GCAA)31227436042743615Coding
105. (CATT)31228017402801751Non coding
106. (TTAA)72828541882854215Non coding
107. (AATG)31228846282884639Non coding
108. (TTTA)31228924792892490Coding
109. (AATC)31229036972903708Non coding
110. (GATT)31229266342926645Coding
111. (AAAT)31229389452938956Non coding
112. (ACTC)31229484342948445Non coding
113. (TATT)31229899172989928Coding
114. (AATG)31231019813101992Non coding
115. (AATG)31231390723139083Non coding
116. (AATG)31231753043175315Non coding
117. (ATTG)31231966813196692Non coding
118. (AATT)31232540173254028Non coding
119. (AATC)31232637113263722Non coding
120. (AATG)31232782503278261Non coding
121. (TTTC)31232888183288829Non coding
122. (AAAT)31233657843365795Non coding
123. (AATT)31234493643449375Non coding
124. (AATG)31235041073504118Non coding
125. (AATT)31235198023519813Non coding
126. (ATTG)31235236563523667Non coding
127. (ATAA)31235384603538471Coding
128. (TCAA)31235457013545712Non coding
129. (TAAA)31235476133547624Non coding
130. (AATG)31235517833551794Non coding
131. (TTGG)31235742103574221Coding
132. (AATA)31236155213615532Non coding
133. (TAAT)31236194873619498Non coding
134. (AAAC)31236210563621067Non coding
135. (TATT)31236264733626484Coding
136. (CAAT)41636675613667576Non coding
137. (CATT)31236770283677039Non coding
138. (TACT)31236789253678936Non coding
139. (CATT)31237023573702368Non coding
140. (TGGT)31237308883730899Non coding
141. (AATG)31237958353795846Non coding
142. (TGCT)31239008213900832Non coding
143. (TAAT)31240400124040023Non coding
144. (AATG)31240631034063114Non coding
145. (AATG)31241250784125089Non coding
146. (ATAA)31241315594131570Non coding
147. (AATA)31242244814224492Non coding
148. (GTAA)31242418994241910Non coding
149. (CATT)31242514904251501Non coding
150. (AATG)31242757844275795Non coding
151. (AATG)31243076414307652Non coding
152. (ATTG)31243420454342056Coding
153. (AAAT)31245430784543089Non coding
154. (TCTA)31245826534582664Non coding
155. (TACC)31246030334603044Non coding
156. (TAGC)31246309164630927Non coding
157. (TTCT)31246506694650680Non coding
158. (ACTG)31246906474690658Coding
159. (TACA)31246946234694634Non coding
160. (AATG)31246994694699480Non coding
161. (CATT)31247060044706015Non coding
162. (AAAT)31247421934742204Non coding
163. (CTAT)31248223224822333Non coding
164. (AAAT)31248703354870346Non coding
165. (TATT)31248755704875581Coding
166. (TAAT)31248982204898231Non coding
167. (AATG)31249273834927394Non coding
168. (TAAT)31250244375024448Coding-Non coding
169. (AGTT)31250751535075164Non coding
170. (CATT)31251090525109063Non coding
171. (CATT)31252125725212583Non coding
172. (TAAT)31252462375246248Coding-Non coding
173. (ACTT)31252488715248882Non coding
174. (TGGT)31252964525296463Non coding
175. (CATT)31253218305321841Non coding
176. (AATG)31253370095337020Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.