CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc punctiforme PCC 73102 (NC_010628 8234323 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 299     Density of SSR      : 1SSR/ 27.45 kb   Average length of SSR  : 13.07 bp
Coding      : 229     Non-Coding           : 64   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 152 110 11 23 299
IMPERFECT 2 254 2357 2125 202 205 5145
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAG)41299539964Coding
2. (ATG)4124229342304Coding
3. (AGC)4129223992250Coding
4. (ATT)412112092112103Coding
5. (TGT)412115059115070Coding
6. (CAAT)312121610121621Coding
7. (CTG)412127909127920Coding
8. (ATA)412195655195666Coding
9. (TGT)412207272207283Non coding
10. (TGT)412232908232919Coding
11. (CAG)412284387284398Coding
12. (GAT)412291796291807Coding
13. (CTG)412306298306309Coding
14. (AAGT)312319609319620Non coding
15. (TTTG)312337968337979Coding
16. (ATTT)312380529380540Non coding
17. (GGTT)312401356401367Coding
18. (TGG)412405687405698Coding
19. (TTC)412481793481804Coding
20. (ATCT)312497571497582Coding
21. (TTGG)312513822513833Non coding
22. (AGCC)312538403538414Coding
23. (TGGTG)315545736545750Non coding
24. (AAGT)312558846558857Non coding
25. (TTAG)312567321567332Non coding
26. (GAAA)312572584572595Coding
27. (TGT)412577582577593Coding
28. (AATA)312585791585802Non coding
29. (AGA)412590587590598Non coding
30. (GCG)412594217594228Coding
31. (TGT)412632648632659Non coding
32. (TCA)412665522665533Coding
33. (GGT)515670130670144Coding
34. (TCAT)312676822676833Non coding
35. (AATT)312697748697759Non coding
36. (TAAT)312718173718184Coding
37. (AATG)312726148726159Coding
38. (CTTG)312779685779696Coding
39. (GTTG)312801538801549Coding
40. (AAAT)312806087806098Coding
41. (AGC)412830878830889Coding
42. (TCA)412840093840104Coding
43. (ATAA)312858232858243Non coding
44. (GCC)412876887876898Coding
45. (TGT)412923619923630Coding
46. (TTGGCG)318925400925417Coding
47. (GTG)515929816929830Coding
48. (AAG)412955799955810Coding
49. (TGA)412957970957981Coding
50. (TTGA)312987121987132Coding
51. (CTG)41210079621007973Coding
52. (CGG)41210143071014318Coding
53. (ACT)41210193771019388Coding
54. (GTC)41210242431024254Coding
55. (ATTT)31210363721036383Non coding
56. (TGC)41210675961067607Coding
57. (AAGT)31211323631132374Non coding
58. (TA)61212095871209598Non coding
59. (TGT)41212235771223588Coding
60. (CAAG)31212634171263428Coding
61. (CTG)51513117161311730Coding
62. (AAAT)31213798841379895Non coding
63. (TAAA)31214233161423327Coding
64. (AAAGCA)31814426091442626Coding
65. (AAAT)31214773351477346Coding
66. (CTG)41214824381482449Coding
67. (CAA)41214987641498775Coding
68. (AACC)31215091461509157Coding
69. (ACCAAC)31815099821509999Coding
70. (CAC)41215296041529615Coding
71. (CAAC)31215336991533710Coding
72. (CAAGC)31515405291540543Non coding
73. (CCATTA)31815674631567480Coding
74. (ATAC)31215863391586350Coding
75. (AATA)31215929621592973Coding
76. (TCA)51515938021593816Coding
77. (CGG)51516109461610960Coding
78. (CAAA)31216180481618059Non coding
79. (AGGATT)31816407721640789Coding
80. (AAT)41216487561648767Coding
81. (AAAT)31216572411657252Non coding
82. (GGAA)31217082161708227Coding
83. (CCCTTT)31817340351734052Non coding
84. (TTAA)31217510461751057Non coding
85. (AAAT)31218269431826954Non coding
86. (TTGGC)31518336361833650Coding
87. (AATC)31218571481857159Non coding
88. (CATA)31218786251878636Coding
89. (GCT)41219168901916901Coding
90. (GGC)51519600751960089Coding
91. (AGC)41219827901982801Coding
92. (CAT)41219954841995495Coding
93. (TTTA)31220005942000605Coding-Non coding
94. (ATTTA)31520099082009922Non coding
95. (TTTC)31220582592058270Coding
96. (CAAC)31220734102073421Coding
97. (CGG)51520808862080900Coding
98. (CCAA)31221005912100602Coding
99. (ATT)41221202692120280Non coding
100. (ACA)41221290512129062Coding
101. (TAT)41221345212134532Coding
102. (TGA)41221869192186930Coding
103. (CCTTTC)31822371972237214Non coding
104. (CAA)41222837852283796Coding
105. (AAC)41223007792300790Coding
106. (GCC)41223210052321016Coding
107. (GTTC)31223392042339215Non coding
108. (AAG)41223558162355827Coding
109. (GTAT)31223720002372011Coding
110. (TGT)41223747462374757Coding
111. (ACA)41224155732415584Non coding
112. (AAT)41224211612421172Coding
113. (TGT)41224317822431793Coding
114. (TGT)41224452572445268Non coding
115. (AG)61224516692451680Coding
116. (ACC)41224543672454378Coding
117. (GAGAA)31524592822459296Coding
118. (AAC)41224879102487921Coding
119. (GGTA)31225360352536046Coding
120. (CTG)41225837272583738Non coding
121. (AAGGGG)31825971922597209Non coding
122. (AAC)41226297262629737Coding
123. (CTGG)31226829862682997Coding
124. (AAC)41227451492745160Coding
125. (TCAT)31227511172751128Coding
126. (GCG)41227794132779424Coding
127. (GTTGGT)42428189142818937Coding
128. (TGC)41228512752851286Coding
129. (TGA)41228597092859720Coding
130. (CGG)41229095942909605Coding
131. (AGTT)31229935522993563Non coding
132. (TCA)41229942592994270Coding
133. (AAC)41230463173046328Coding
134. (CGCT)31230732153073226Coding
135. (ACAA)31231145013114512Non coding
136. (CGG)41231437983143809Coding
137. (GATT)31231696233169634Coding
138. (CAAAC)31531842213184235Coding
139. (CAAA)31231849163184927Coding
140. (AAGT)31231980263198037Coding
141. (ATTG)31232177913217802Coding
142. (GCG)41232491433249154Coding
143. (CGG)41232933883293399Coding
144. (AATC)31232995163299527Coding
145. (CTTG)31233842913384302Non coding
146. (CTT)41233850443385055Coding
147. (CTTA)31233885823388593Coding-Non coding
148. (GCACCA)31834080043408021Coding
149. (AGC)41234091803409191Coding
150. (TTAT)31234204753420486Non coding
151. (AAC)41234519163451927Coding
152. (TTTTA)31534680323468046Non coding
153. (AAAT)31234935063493517Coding
154. (CAAT)31235117583511769Coding
155. (GCCGCA)31835323003532317Coding
156. (TCT)41235837063583717Coding
157. (CAC)41236160173616028Coding
158. (CAG)41236629503662961Coding
159. (AAC)41236833423683353Coding
160. (ACA)41237137943713805Coding
161. (CCG)51538617563861770Coding
162. (AGAC)31239492513949262Coding
163. (GACA)31239493133949324Coding
164. (TGC)51540637224063736Coding
165. (GCC)51540917304091744Coding
166. (GGC)41241206784120689Coding
167. (ACAA)31241255164125527Coding
168. (TTATTG)84841406544140701Non coding
169. (GCAA)31241408614140872Non coding
170. (TTTA)31242241124224123Coding
171. (TGT)41242305394230550Non coding
172. (CTTT)31242394844239495Coding
173. (CCAT)31243019854301996Coding
174. (CTT)41243177544317765Coding
175. (TTGG)31243379674337978Coding
176. (ACA)41243483734348384Coding
177. (TAAA)31244043794404390Coding-Non coding
178. (TAG)41244498854449896Non coding
179. (GTTG)31245342204534231Coding
180. (GTT)41245575054557516Coding
181. (TGC)41245670624567073Coding
182. (TTC)41245908404590851Coding
183. (TCA)61846075964607613Coding
184. (AGA)41246661264666137Coding
185. (AGC)41246781684678179Coding
186. (TTTG)31247577234757734Coding
187. (ACC)41247765924776603Coding
188. (CAG)41248496254849636Coding
189. (AAC)41248998384899849Coding
190. (TGT)41249437394943750Coding
191. (GGATA)31549495044949518Non coding
192. (TGA)41249537914953802Coding
193. (AAAT)31250245215024532Coding
194. (TTG)41250331675033178Coding
195. (GAA)41250412725041283Non coding
196. (ATTG)31251023085102319Coding
197. (TGC)41251190625119073Coding
198. (TGAT)31251799385179949Coding-Non coding
199. (TAAA)31252321215232132Non coding
200. (CAT)51553290085329022Coding
201. (TTGTGG)31853329335332950Coding
202. (CAGC)31253504145350425Coding
203. (AAGA)31253534065353417Coding
204. (AACA)31253591485359159Coding
205. (CAGCCA)31853684215368438Coding
206. (CCACAG)31853684545368471Coding
207. (CAGCCA)42453685235368546Coding
208. (TGT)41253876465387657Coding
209. (CAAAA)31554278855427899Non coding
210. (AAC)41254349395434950Coding
211. (CAC)41254660865466097Coding
212. (TTAT)31254678425467853Non coding
213. (AAC)41254740365474047Coding
214. (AAT)41254806305480641Coding
215. (AGTA)31254913975491408Coding
216. (GGC)41255243545524365Coding
217. (TTA)41256422655642276Coding
218. (AATA)31256982775698288Coding
219. (TATT)31257144155714426Non coding
220. (ATTT)31257350735735084Coding
221. (TGT)41257910645791075Coding
222. (ATAA)31258222685822279Coding
223. (TTAA)31258591675859178Coding-Non coding
224. (AAC)41258664395866450Coding
225. (GCA)41259258785925889Coding
226. (GCT)41259259745925985Coding
227. (TGGAGT)42459529225952945Coding
228. (ATTA)31259658105965821Non coding
229. (CAG)41260200596020070Coding
230. (TCAAAA)31860244076024424Non coding
231. (CAA)41260606396060650Non coding
232. (TAT)41260747846074795Coding
233. (ACTT)31261366146136625Coding
234. (AAGT)31261412156141226Non coding
235. (TC)61261490286149039Coding
236. (ATTT)31261512476151258Non coding
237. (ACC)41261556596155670Coding
238. (TGG)41261615536161564Coding
239. (ATG)41262162296216240Coding
240. (AACTAG)31862203306220347Coding
241. (GAG)41262893566289367Coding
242. (TTGCA)31563188336318847Coding
243. (AAC)41263464156346426Coding
244. (CAG)41263521876352198Coding
245. (AATT)52064202496420268Coding-Non coding
246. (CAG)41264349316434942Coding
247. (AAC)41265308746530885Coding
248. (TATT)31265556416555652Coding
249. (ATT)41266075916607602Coding
250. (CAA)41266505226650533Coding
251. (TTAA)31266638296663840Coding-Non coding
252. (TGT)41266876136687624Coding
253. (TGT)41267188096718820Coding
254. (TAGCTA)31867948556794872Coding
255. (GGTA)31268144116814422Coding
256. (AAAT)31268386446838655Non coding
257. (TAAT)31269092256909236Non coding
258. (TTA)41269144986914509Non coding
259. (AGCT)31269158896915900Coding
260. (GATT)31270060907006101Coding
261. (AATT)31270308217030832Non coding
262. (TAG)41270668657066876Coding
263. (GCC)41270936037093614Coding
264. (GTT)41271493087149319Coding
265. (CTG)41271605117160522Coding
266. (ACA)41271745787174589Coding
267. (CTT)41272047257204736Coding
268. (AGC)41272177037217714Coding
269. (ATG)41272290427229053Coding
270. (AAGC)31272468327246843Coding
271. (CGC)41272766347276645Coding
272. (TGTT)31274030507403061Coding
273. (TTGG)31274963697496380Coding
274. (AAGT)31275065027506513Coding
275. (TTG)51575413817541395Coding
276. (AAC)41275890737589084Coding
277. (GTG)41275919737591984Non coding
278. (TGAT)31276273657627376Non coding
279. (CAG)41276854227685433Coding
280. (CTTA)31277006747700685Coding
281. (TGA)41277029307702941Coding
282. (CAA)41277282357728246Non coding
283. (AATT)31277612037761214Non coding
284. (TGCAA)31578476367847650Non coding
285. (GCCAAA)31878704317870448Coding
286. (AATA)31278810417881052Non coding
287. (TCT)41278836277883638Coding
288. (TGA)41278858047885815Coding
289. (ACC)41279276567927667Non coding
290. (TAT)41279810407981051Coding
291. (CTTT)72880497498049776Non coding
292. (TAGA)31280618168061827Coding
293. (CAAGAA)31880764338076450Coding
294. (CAG)41281179858117996Coding
295. (ACTC)31281308168130827Coding
296. (ACCCAC)31881314178131434Coding
297. (ATC)41281492428149253Coding
298. (ATTT)31282239688223979Coding
299. (TGC)41282321048232115Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.