CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc punctiforme PCC 73102 (NC_010628 8234323 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 299     Density of SSR      : 1SSR/ 27.45 kb   Average length of SSR  : 13.07 bp
Coding      : 229     Non-Coding           : 64   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 152 110 11 23 299
IMPERFECT 2 254 2357 2125 202 205 5145
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAG)41299539964Coding
2. (ATG)4124229342304Coding
3. (AGC)4129223992250Coding
4. (ATT)412112092112103Coding
5. (TGT)412115059115070Coding
6. (CTG)412127909127920Coding
7. (ATA)412195655195666Coding
8. (TGT)412207272207283Non coding
9. (TGT)412232908232919Coding
10. (CAG)412284387284398Coding
11. (GAT)412291796291807Coding
12. (CTG)412306298306309Coding
13. (TGG)412405687405698Coding
14. (TTC)412481793481804Coding
15. (TGT)412577582577593Coding
16. (AGA)412590587590598Non coding
17. (GCG)412594217594228Coding
18. (TGT)412632648632659Non coding
19. (TCA)412665522665533Coding
20. (GGT)515670130670144Coding
21. (AGC)412830878830889Coding
22. (TCA)412840093840104Coding
23. (GCC)412876887876898Coding
24. (TGT)412923619923630Coding
25. (GTG)515929816929830Coding
26. (AAG)412955799955810Coding
27. (TGA)412957970957981Coding
28. (CTG)41210079621007973Coding
29. (CGG)41210143071014318Coding
30. (ACT)41210193771019388Coding
31. (GTC)41210242431024254Coding
32. (TGC)41210675961067607Coding
33. (TGT)41212235771223588Coding
34. (CTG)51513117161311730Coding
35. (CTG)41214824381482449Coding
36. (CAA)41214987641498775Coding
37. (CAC)41215296041529615Coding
38. (TCA)51515938021593816Coding
39. (CGG)51516109461610960Coding
40. (AAT)41216487561648767Coding
41. (GCT)41219168901916901Coding
42. (GGC)51519600751960089Coding
43. (AGC)41219827901982801Coding
44. (CAT)41219954841995495Coding
45. (CGG)51520808862080900Coding
46. (ATT)41221202692120280Non coding
47. (ACA)41221290512129062Coding
48. (TAT)41221345212134532Coding
49. (TGA)41221869192186930Coding
50. (CAA)41222837852283796Coding
51. (AAC)41223007792300790Coding
52. (GCC)41223210052321016Coding
53. (AAG)41223558162355827Coding
54. (TGT)41223747462374757Coding
55. (ACA)41224155732415584Non coding
56. (AAT)41224211612421172Coding
57. (TGT)41224317822431793Coding
58. (TGT)41224452572445268Non coding
59. (ACC)41224543672454378Coding
60. (AAC)41224879102487921Coding
61. (CTG)41225837272583738Non coding
62. (AAC)41226297262629737Coding
63. (AAC)41227451492745160Coding
64. (GCG)41227794132779424Coding
65. (TGC)41228512752851286Coding
66. (TGA)41228597092859720Coding
67. (CGG)41229095942909605Coding
68. (TCA)41229942592994270Coding
69. (AAC)41230463173046328Coding
70. (CGG)41231437983143809Coding
71. (GCG)41232491433249154Coding
72. (CGG)41232933883293399Coding
73. (CTT)41233850443385055Coding
74. (AGC)41234091803409191Coding
75. (AAC)41234519163451927Coding
76. (TCT)41235837063583717Coding
77. (CAC)41236160173616028Coding
78. (CAG)41236629503662961Coding
79. (AAC)41236833423683353Coding
80. (ACA)41237137943713805Coding
81. (CCG)51538617563861770Coding
82. (TGC)51540637224063736Coding
83. (GCC)51540917304091744Coding
84. (GGC)41241206784120689Coding
85. (TGT)41242305394230550Non coding
86. (CTT)41243177544317765Coding
87. (ACA)41243483734348384Coding
88. (TAG)41244498854449896Non coding
89. (GTT)41245575054557516Coding
90. (TGC)41245670624567073Coding
91. (TTC)41245908404590851Coding
92. (TCA)61846075964607613Coding
93. (AGA)41246661264666137Coding
94. (AGC)41246781684678179Coding
95. (ACC)41247765924776603Coding
96. (CAG)41248496254849636Coding
97. (AAC)41248998384899849Coding
98. (TGT)41249437394943750Coding
99. (TGA)41249537914953802Coding
100. (TTG)41250331675033178Coding
101. (GAA)41250412725041283Non coding
102. (TGC)41251190625119073Coding
103. (CAT)51553290085329022Coding
104. (TGT)41253876465387657Coding
105. (AAC)41254349395434950Coding
106. (CAC)41254660865466097Coding
107. (AAC)41254740365474047Coding
108. (AAT)41254806305480641Coding
109. (GGC)41255243545524365Coding
110. (TTA)41256422655642276Coding
111. (TGT)41257910645791075Coding
112. (AAC)41258664395866450Coding
113. (GCA)41259258785925889Coding
114. (GCT)41259259745925985Coding
115. (CAG)41260200596020070Coding
116. (CAA)41260606396060650Non coding
117. (TAT)41260747846074795Coding
118. (ACC)41261556596155670Coding
119. (TGG)41261615536161564Coding
120. (ATG)41262162296216240Coding
121. (GAG)41262893566289367Coding
122. (AAC)41263464156346426Coding
123. (CAG)41263521876352198Coding
124. (CAG)41264349316434942Coding
125. (AAC)41265308746530885Coding
126. (ATT)41266075916607602Coding
127. (CAA)41266505226650533Coding
128. (TGT)41266876136687624Coding
129. (TGT)41267188096718820Coding
130. (TTA)41269144986914509Non coding
131. (TAG)41270668657066876Coding
132. (GCC)41270936037093614Coding
133. (GTT)41271493087149319Coding
134. (CTG)41271605117160522Coding
135. (ACA)41271745787174589Coding
136. (CTT)41272047257204736Coding
137. (AGC)41272177037217714Coding
138. (ATG)41272290427229053Coding
139. (CGC)41272766347276645Coding
140. (TTG)51575413817541395Coding
141. (AAC)41275890737589084Coding
142. (GTG)41275919737591984Non coding
143. (CAG)41276854227685433Coding
144. (TGA)41277029307702941Coding
145. (CAA)41277282357728246Non coding
146. (TCT)41278836277883638Coding
147. (TGA)41278858047885815Coding
148. (ACC)41279276567927667Non coding
149. (TAT)41279810407981051Coding
150. (CAG)41281179858117996Coding
151. (ATC)41281492428149253Coding
152. (TGC)41282321048232115Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.