CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Nostoc punctiforme PCC 73102 (NC_010628 8234323 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 299     Density of SSR      : 1SSR/ 27.45 kb   Average length of SSR  : 13.07 bp
Coding      : 229     Non-Coding           : 64   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 152 110 11 23 299
IMPERFECT 2 254 2357 2125 202 205 5145
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAAT)312121610121621Coding
2. (AAGT)312319609319620Non coding
3. (TTTG)312337968337979Coding
4. (ATTT)312380529380540Non coding
5. (GGTT)312401356401367Coding
6. (ATCT)312497571497582Coding
7. (TTGG)312513822513833Non coding
8. (AGCC)312538403538414Coding
9. (AAGT)312558846558857Non coding
10. (TTAG)312567321567332Non coding
11. (GAAA)312572584572595Coding
12. (AATA)312585791585802Non coding
13. (TCAT)312676822676833Non coding
14. (AATT)312697748697759Non coding
15. (TAAT)312718173718184Coding
16. (AATG)312726148726159Coding
17. (CTTG)312779685779696Coding
18. (GTTG)312801538801549Coding
19. (AAAT)312806087806098Coding
20. (ATAA)312858232858243Non coding
21. (TTGA)312987121987132Coding
22. (ATTT)31210363721036383Non coding
23. (AAGT)31211323631132374Non coding
24. (CAAG)31212634171263428Coding
25. (AAAT)31213798841379895Non coding
26. (TAAA)31214233161423327Coding
27. (AAAT)31214773351477346Coding
28. (AACC)31215091461509157Coding
29. (CAAC)31215336991533710Coding
30. (ATAC)31215863391586350Coding
31. (AATA)31215929621592973Coding
32. (CAAA)31216180481618059Non coding
33. (AAAT)31216572411657252Non coding
34. (GGAA)31217082161708227Coding
35. (TTAA)31217510461751057Non coding
36. (AAAT)31218269431826954Non coding
37. (AATC)31218571481857159Non coding
38. (CATA)31218786251878636Coding
39. (TTTA)31220005942000605Coding-Non coding
40. (TTTC)31220582592058270Coding
41. (CAAC)31220734102073421Coding
42. (CCAA)31221005912100602Coding
43. (GTTC)31223392042339215Non coding
44. (GTAT)31223720002372011Coding
45. (GGTA)31225360352536046Coding
46. (CTGG)31226829862682997Coding
47. (TCAT)31227511172751128Coding
48. (AGTT)31229935522993563Non coding
49. (CGCT)31230732153073226Coding
50. (ACAA)31231145013114512Non coding
51. (GATT)31231696233169634Coding
52. (CAAA)31231849163184927Coding
53. (AAGT)31231980263198037Coding
54. (ATTG)31232177913217802Coding
55. (AATC)31232995163299527Coding
56. (CTTG)31233842913384302Non coding
57. (CTTA)31233885823388593Coding-Non coding
58. (TTAT)31234204753420486Non coding
59. (AAAT)31234935063493517Coding
60. (CAAT)31235117583511769Coding
61. (AGAC)31239492513949262Coding
62. (GACA)31239493133949324Coding
63. (ACAA)31241255164125527Coding
64. (GCAA)31241408614140872Non coding
65. (TTTA)31242241124224123Coding
66. (CTTT)31242394844239495Coding
67. (CCAT)31243019854301996Coding
68. (TTGG)31243379674337978Coding
69. (TAAA)31244043794404390Coding-Non coding
70. (GTTG)31245342204534231Coding
71. (TTTG)31247577234757734Coding
72. (AAAT)31250245215024532Coding
73. (ATTG)31251023085102319Coding
74. (TGAT)31251799385179949Coding-Non coding
75. (TAAA)31252321215232132Non coding
76. (CAGC)31253504145350425Coding
77. (AAGA)31253534065353417Coding
78. (AACA)31253591485359159Coding
79. (TTAT)31254678425467853Non coding
80. (AGTA)31254913975491408Coding
81. (AATA)31256982775698288Coding
82. (TATT)31257144155714426Non coding
83. (ATTT)31257350735735084Coding
84. (ATAA)31258222685822279Coding
85. (TTAA)31258591675859178Coding-Non coding
86. (ATTA)31259658105965821Non coding
87. (ACTT)31261366146136625Coding
88. (AAGT)31261412156141226Non coding
89. (ATTT)31261512476151258Non coding
90. (AATT)52064202496420268Coding-Non coding
91. (TATT)31265556416555652Coding
92. (TTAA)31266638296663840Coding-Non coding
93. (GGTA)31268144116814422Coding
94. (AAAT)31268386446838655Non coding
95. (TAAT)31269092256909236Non coding
96. (AGCT)31269158896915900Coding
97. (GATT)31270060907006101Coding
98. (AATT)31270308217030832Non coding
99. (AAGC)31272468327246843Coding
100. (TGTT)31274030507403061Coding
101. (TTGG)31274963697496380Coding
102. (AAGT)31275065027506513Coding
103. (TGAT)31276273657627376Non coding
104. (CTTA)31277006747700685Coding
105. (AATT)31277612037761214Non coding
106. (AATA)31278810417881052Non coding
107. (CTTT)72880497498049776Non coding
108. (TAGA)31280618168061827Coding
109. (ACTC)31281308168130827Coding
110. (ATTT)31282239688223979Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.