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Organism:
Nostoc sp. PCC 7107
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(NC_019676 , 6329824 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
1
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Overlapping Compound
:
0
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Perfect
:
294
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Density of SSR
:
1SSR/
21.46
kb
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Average length of SSR
:
12.95
bp
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Coding
:
240
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Non-Coding
:
50
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Coding and Non-Coding
:
5
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (AAG)4 | 12 | 18687 | 18698 | Coding |
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2.
| (CAC)5 | 15 | 110810 | 110824 | Coding |
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3.
| (ACC)5 | 15 | 111273 | 111287 | Coding |
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4.
| (CGC)4 | 12 | 247484 | 247495 | Coding |
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5.
| (GAT)4 | 12 | 312563 | 312574 | Coding |
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6.
| (TGT)4 | 12 | 321016 | 321027 | Coding |
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7.
| (CTT)4 | 12 | 368256 | 368267 | Non coding |
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8.
| (AGC)4 | 12 | 431463 | 431474 | Coding |
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9.
| (GCC)4 | 12 | 482869 | 482880 | Coding |
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10.
| (GGC)4 | 12 | 497414 | 497425 | Coding |
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11.
| (ACC)4 | 12 | 538019 | 538030 | Coding |
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12.
| (GCG)4 | 12 | 612064 | 612075 | Coding |
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13.
| (TAA)4 | 12 | 629221 | 629232 | Coding |
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14.
| (ATC)4 | 12 | 708440 | 708451 | Coding |
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15.
| (TTG)4 | 12 | 723384 | 723395 | Coding |
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16.
| (GCC)4 | 12 | 1004152 | 1004163 | Coding |
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17.
| (CTA)4 | 12 | 1049216 | 1049227 | Coding |
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18.
| (CCG)5 | 15 | 1057142 | 1057156 | Coding |
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19.
| (TCA)4 | 12 | 1069791 | 1069802 | Coding |
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20.
| (CCG)4 | 12 | 1124865 | 1124876 | Coding |
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21.
| (CTG)4 | 12 | 1134182 | 1134193 | Coding |
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22.
| (TGA)4 | 12 | 1156766 | 1156777 | Coding |
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23.
| (AGC)4 | 12 | 1161532 | 1161543 | Coding |
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24.
| (TTA)4 | 12 | 1170332 | 1170343 | Coding |
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25.
| (AAT)4 | 12 | 1376901 | 1376912 | Non coding |
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26.
| (CTG)4 | 12 | 1379890 | 1379901 | Coding |
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27.
| (TCC)4 | 12 | 1483581 | 1483592 | Coding |
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28.
| (GCT)5 | 15 | 1562365 | 1562379 | Coding |
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29.
| (CCA)4 | 12 | 1705281 | 1705292 | Coding |
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30.
| (AAG)4 | 12 | 1838862 | 1838873 | Coding |
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31.
| (CAC)4 | 12 | 1848439 | 1848450 | Coding |
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32.
| (GTA)4 | 12 | 1968875 | 1968886 | Coding |
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33.
| (GAT)5 | 15 | 1990123 | 1990137 | Coding |
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34.
| (GGC)6 | 18 | 2021799 | 2021816 | Coding |
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35.
| (AAG)4 | 12 | 2034523 | 2034534 | Coding |
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36.
| (TTG)4 | 12 | 2111990 | 2112001 | Coding |
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37.
| (ATG)4 | 12 | 2167987 | 2167998 | Coding |
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38.
| (GCG)4 | 12 | 2273247 | 2273258 | Coding |
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39.
| (CTG)4 | 12 | 2284616 | 2284627 | Coding |
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40.
| (CCA)4 | 12 | 2295964 | 2295975 | Coding |
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41.
| (CGG)4 | 12 | 2337241 | 2337252 | Coding |
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42.
| (CGC)4 | 12 | 2427534 | 2427545 | Coding |
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43.
| (TTA)4 | 12 | 2522373 | 2522384 | Coding |
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44.
| (GGT)4 | 12 | 2675292 | 2675303 | Coding |
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45.
| (GGC)4 | 12 | 2708357 | 2708368 | Coding |
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46.
| (TCC)4 | 12 | 2738267 | 2738278 | Coding |
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47.
| (TCA)4 | 12 | 2750222 | 2750233 | Coding |
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48.
| (ATC)6 | 18 | 2835942 | 2835959 | Coding |
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49.
| (GAA)4 | 12 | 2865982 | 2865993 | Coding |
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50.
| (AAT)4 | 12 | 2909940 | 2909951 | Coding |
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51.
| (TGG)4 | 12 | 2911791 | 2911802 | Coding |
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52.
| (CGC)5 | 15 | 2969844 | 2969858 | Coding |
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53.
| (CCG)4 | 12 | 2972755 | 2972766 | Coding |
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54.
| (CAC)4 | 12 | 3033258 | 3033269 | Coding |
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55.
| (TAA)4 | 12 | 3067367 | 3067378 | Non coding |
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56.
| (TGA)4 | 12 | 3070103 | 3070114 | Coding |
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57.
| (AGA)4 | 12 | 3075286 | 3075297 | Coding |
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58.
| (CGG)4 | 12 | 3087669 | 3087680 | Coding |
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59.
| (AAC)4 | 12 | 3116531 | 3116542 | Coding |
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60.
| (GCC)4 | 12 | 3179662 | 3179673 | Coding |
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61.
| (CCA)4 | 12 | 3213509 | 3213520 | Coding |
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62.
| (GGC)4 | 12 | 3225840 | 3225851 | Coding |
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63.
| (GGC)4 | 12 | 3225954 | 3225965 | Coding |
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64.
| (TGG)5 | 15 | 3234982 | 3234996 | Coding |
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65.
| (ATG)4 | 12 | 3303368 | 3303379 | Coding |
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66.
| (GTT)4 | 12 | 3338614 | 3338625 | Coding |
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67.
| (AGT)4 | 12 | 3359755 | 3359766 | Coding |
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68.
| (TGC)4 | 12 | 3437439 | 3437450 | Coding |
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69.
| (GAA)4 | 12 | 3616742 | 3616753 | Coding |
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70.
| (CAG)4 | 12 | 3642096 | 3642107 | Coding |
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71.
| (ATC)4 | 12 | 3649773 | 3649784 | Coding |
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72.
| (AGC)4 | 12 | 3653697 | 3653708 | Coding |
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73.
| (CTG)4 | 12 | 3677234 | 3677245 | Coding |
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74.
| (GCG)5 | 15 | 3715289 | 3715303 | Coding |
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75.
| (TGC)4 | 12 | 3724726 | 3724737 | Coding |
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76.
| (ACC)4 | 12 | 3727099 | 3727110 | Coding |
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77.
| (CTT)4 | 12 | 3732187 | 3732198 | Coding |
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78.
| (GTT)4 | 12 | 3732716 | 3732727 | Coding |
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79.
| (GCT)4 | 12 | 3771320 | 3771331 | Coding |
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80.
| (GAT)4 | 12 | 4071280 | 4071291 | Coding |
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81.
| (TTG)4 | 12 | 4140835 | 4140846 | Coding |
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82.
| (TGA)5 | 15 | 4310109 | 4310123 | Coding |
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83.
| (TAG)4 | 12 | 4350977 | 4350988 | Coding |
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84.
| (AGT)4 | 12 | 4356443 | 4356454 | Coding |
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85.
| (TGG)4 | 12 | 4371140 | 4371151 | Coding |
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86.
| (GCC)4 | 12 | 4387338 | 4387349 | Coding |
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87.
| (TTG)4 | 12 | 4391146 | 4391157 | Coding |
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88.
| (AAC)4 | 12 | 4475649 | 4475660 | Coding |
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89.
| (TCT)4 | 12 | 4485742 | 4485753 | Coding |
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90.
| (CAG)4 | 12 | 4533027 | 4533038 | Coding |
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91.
| (ATC)4 | 12 | 4571159 | 4571170 | Coding |
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92.
| (CAG)4 | 12 | 4603862 | 4603873 | Coding |
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93.
| (TAT)4 | 12 | 4689364 | 4689375 | Coding |
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94.
| (CGG)4 | 12 | 4704756 | 4704767 | Coding |
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95.
| (CAG)5 | 15 | 4788714 | 4788728 | Coding |
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96.
| (CGC)4 | 12 | 4839941 | 4839952 | Coding |
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97.
| (GTG)4 | 12 | 4876915 | 4876926 | Coding |
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98.
| (TCA)5 | 15 | 4892138 | 4892152 | Coding |
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99.
| (CTG)4 | 12 | 4899969 | 4899980 | Coding |
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100.
| (CTT)4 | 12 | 4909141 | 4909152 | Coding |
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101.
| (TTG)4 | 12 | 4944093 | 4944104 | Coding |
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102.
| (ACA)4 | 12 | 4993286 | 4993297 | Coding |
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103.
| (TGG)4 | 12 | 5003955 | 5003966 | Coding |
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104.
| (CCA)4 | 12 | 5035757 | 5035768 | Coding |
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105.
| (CCA)4 | 12 | 5036318 | 5036329 | Coding |
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106.
| (TCT)4 | 12 | 5048861 | 5048872 | Non coding |
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107.
| (TGA)5 | 15 | 5069603 | 5069617 | Coding |
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108.
| (TTG)4 | 12 | 5122310 | 5122321 | Coding |
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109.
| (TTC)4 | 12 | 5122902 | 5122913 | Coding |
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110.
| (TTC)4 | 12 | 5136317 | 5136328 | Coding |
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111.
| (CCA)4 | 12 | 5159709 | 5159720 | Coding |
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112.
| (CCG)4 | 12 | 5169338 | 5169349 | Coding |
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113.
| (GTG)4 | 12 | 5270866 | 5270877 | Coding |
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114.
| (ACC)5 | 15 | 5295954 | 5295968 | Coding |
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115.
| (ACA)4 | 12 | 5298012 | 5298023 | Non coding |
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116.
| (GCT)4 | 12 | 5439958 | 5439969 | Coding |
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117.
| (TTG)4 | 12 | 5464886 | 5464897 | Coding |
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118.
| (CAG)4 | 12 | 5480711 | 5480722 | Coding |
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119.
| (AAT)4 | 12 | 5548483 | 5548494 | Non coding |
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120.
| (TTG)4 | 12 | 5636570 | 5636581 | Coding |
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121.
| (CGG)4 | 12 | 5653661 | 5653672 | Coding |
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122.
| (GCC)4 | 12 | 5711105 | 5711116 | Coding |
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123.
| (GGT)4 | 12 | 5734468 | 5734479 | Coding |
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124.
| (TTG)4 | 12 | 5740416 | 5740427 | Coding |
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125.
| (GGT)4 | 12 | 5887769 | 5887780 | Coding |
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126.
| (AAT)4 | 12 | 5930875 | 5930886 | Coding |
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127.
| (GCC)4 | 12 | 5950867 | 5950878 | Coding |
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128.
| (ACC)5 | 15 | 5955697 | 5955711 | Coding |
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129.
| (GCT)4 | 12 | 5968958 | 5968969 | Coding |
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130.
| (CGC)4 | 12 | 6057252 | 6057263 | Coding |
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131.
| (CTG)4 | 12 | 6108082 | 6108093 | Coding |
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132.
| (GTT)4 | 12 | 6137520 | 6137531 | Coding |
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133.
| (GCC)4 | 12 | 6303162 | 6303173 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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