CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7107 (NC_019676 6329824 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 294     Density of SSR      : 1SSR/ 21.46 kb   Average length of SSR  : 12.95 bp
Coding      : 240     Non-Coding           : 50   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 133 126 12 22 294
IMPERFECT 2 196 2214 1695 189 164 4460
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAG)4121868718698Coding
2. (CAC)515110810110824Coding
3. (ACC)515111273111287Coding
4. (CGC)412247484247495Coding
5. (GAT)412312563312574Coding
6. (TGT)412321016321027Coding
7. (CTT)412368256368267Non coding
8. (AGC)412431463431474Coding
9. (GCC)412482869482880Coding
10. (GGC)412497414497425Coding
11. (ACC)412538019538030Coding
12. (GCG)412612064612075Coding
13. (TAA)412629221629232Coding
14. (ATC)412708440708451Coding
15. (TTG)412723384723395Coding
16. (GCC)41210041521004163Coding
17. (CTA)41210492161049227Coding
18. (CCG)51510571421057156Coding
19. (TCA)41210697911069802Coding
20. (CCG)41211248651124876Coding
21. (CTG)41211341821134193Coding
22. (TGA)41211567661156777Coding
23. (AGC)41211615321161543Coding
24. (TTA)41211703321170343Coding
25. (AAT)41213769011376912Non coding
26. (CTG)41213798901379901Coding
27. (TCC)41214835811483592Coding
28. (GCT)51515623651562379Coding
29. (CCA)41217052811705292Coding
30. (AAG)41218388621838873Coding
31. (CAC)41218484391848450Coding
32. (GTA)41219688751968886Coding
33. (GAT)51519901231990137Coding
34. (GGC)61820217992021816Coding
35. (AAG)41220345232034534Coding
36. (TTG)41221119902112001Coding
37. (ATG)41221679872167998Coding
38. (GCG)41222732472273258Coding
39. (CTG)41222846162284627Coding
40. (CCA)41222959642295975Coding
41. (CGG)41223372412337252Coding
42. (CGC)41224275342427545Coding
43. (TTA)41225223732522384Coding
44. (GGT)41226752922675303Coding
45. (GGC)41227083572708368Coding
46. (TCC)41227382672738278Coding
47. (TCA)41227502222750233Coding
48. (ATC)61828359422835959Coding
49. (GAA)41228659822865993Coding
50. (AAT)41229099402909951Coding
51. (TGG)41229117912911802Coding
52. (CGC)51529698442969858Coding
53. (CCG)41229727552972766Coding
54. (CAC)41230332583033269Coding
55. (TAA)41230673673067378Non coding
56. (TGA)41230701033070114Coding
57. (AGA)41230752863075297Coding
58. (CGG)41230876693087680Coding
59. (AAC)41231165313116542Coding
60. (GCC)41231796623179673Coding
61. (CCA)41232135093213520Coding
62. (GGC)41232258403225851Coding
63. (GGC)41232259543225965Coding
64. (TGG)51532349823234996Coding
65. (ATG)41233033683303379Coding
66. (GTT)41233386143338625Coding
67. (AGT)41233597553359766Coding
68. (TGC)41234374393437450Coding
69. (GAA)41236167423616753Coding
70. (CAG)41236420963642107Coding
71. (ATC)41236497733649784Coding
72. (AGC)41236536973653708Coding
73. (CTG)41236772343677245Coding
74. (GCG)51537152893715303Coding
75. (TGC)41237247263724737Coding
76. (ACC)41237270993727110Coding
77. (CTT)41237321873732198Coding
78. (GTT)41237327163732727Coding
79. (GCT)41237713203771331Coding
80. (GAT)41240712804071291Coding
81. (TTG)41241408354140846Coding
82. (TGA)51543101094310123Coding
83. (TAG)41243509774350988Coding
84. (AGT)41243564434356454Coding
85. (TGG)41243711404371151Coding
86. (GCC)41243873384387349Coding
87. (TTG)41243911464391157Coding
88. (AAC)41244756494475660Coding
89. (TCT)41244857424485753Coding
90. (CAG)41245330274533038Coding
91. (ATC)41245711594571170Coding
92. (CAG)41246038624603873Coding
93. (TAT)41246893644689375Coding
94. (CGG)41247047564704767Coding
95. (CAG)51547887144788728Coding
96. (CGC)41248399414839952Coding
97. (GTG)41248769154876926Coding
98. (TCA)51548921384892152Coding
99. (CTG)41248999694899980Coding
100. (CTT)41249091414909152Coding
101. (TTG)41249440934944104Coding
102. (ACA)41249932864993297Coding
103. (TGG)41250039555003966Coding
104. (CCA)41250357575035768Coding
105. (CCA)41250363185036329Coding
106. (TCT)41250488615048872Non coding
107. (TGA)51550696035069617Coding
108. (TTG)41251223105122321Coding
109. (TTC)41251229025122913Coding
110. (TTC)41251363175136328Coding
111. (CCA)41251597095159720Coding
112. (CCG)41251693385169349Coding
113. (GTG)41252708665270877Coding
114. (ACC)51552959545295968Coding
115. (ACA)41252980125298023Non coding
116. (GCT)41254399585439969Coding
117. (TTG)41254648865464897Coding
118. (CAG)41254807115480722Coding
119. (AAT)41255484835548494Non coding
120. (TTG)41256365705636581Coding
121. (CGG)41256536615653672Coding
122. (GCC)41257111055711116Coding
123. (GGT)41257344685734479Coding
124. (TTG)41257404165740427Coding
125. (GGT)41258877695887780Coding
126. (AAT)41259308755930886Coding
127. (GCC)41259508675950878Coding
128. (ACC)51559556975955711Coding
129. (GCT)41259689585968969Coding
130. (CGC)41260572526057263Coding
131. (CTG)41261080826108093Coding
132. (GTT)41261375206137531Coding
133. (GCC)41263031626303173Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.