CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7107 (NC_019676 6329824 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 294     Density of SSR      : 1SSR/ 21.46 kb   Average length of SSR  : 12.95 bp
Coding      : 240     Non-Coding           : 50   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 133 126 12 22 294
IMPERFECT 2 196 2214 1695 189 164 4460
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAA)3123151731528Coding
2. (ACTC)3127566275673Coding
3. (TTAC)3128577585786Coding
4. (AATA)312113593113604Coding
5. (TTGG)312284513284524Coding
6. (TTTA)312342642342653Non coding
7. (TTTA)312417766417777Coding
8. (CAGT)312438797438808Coding
9. (AGGA)312495601495612Coding-Non coding
10. (ATAA)312603232603243Non coding
11. (TAAA)312616347616358Coding
12. (TAAT)312616807616818Coding
13. (GCAA)312678767678778Non coding
14. (TTTA)312681043681054Non coding
15. (ATAA)312702563702574Coding
16. (AATT)312715273715284Coding
17. (CTTG)312730089730100Coding
18. (GTTG)312785701785712Coding
19. (TAGT)312790973790984Coding
20. (CATT)312873766873777Non coding
21. (GGAT)31211087691108780Coding
22. (CAGT)31211458171145828Coding
23. (GAAC)31211760301176041Non coding
24. (TTAC)31211788111178822Coding
25. (TTGG)31211895791189590Coding
26. (GAAC)31212061131206124Non coding
27. (TTAT)31212109441210955Non coding
28. (ATAA)31212737781273789Coding
29. (CAGT)31213627041362715Coding
30. (GTTC)31213855501385561Non coding
31. (AGCA)31213986301398641Non coding
32. (CAAT)31214326711432682Coding
33. (ACTG)31214468731446884Coding
34. (TTAT)31214605151460526Coding
35. (ATTT)31215205631520574Coding
36. (CAGT)31215430671543078Coding
37. (TAAT)31216692841669295Non coding
38. (CAGT)31217365411736552Coding
39. (CAGT)31217973481797359Coding
40. (GTTT)31218839571883968Coding
41. (ATTA)31218844801884491Non coding
42. (AACT)31218992701899281Non coding
43. (GATG)31219491351949146Coding
44. (ATTT)31219690751969086Coding
45. (AATC)31220686132068624Coding
46. (GCTG)31220838522083863Coding
47. (GTTG)31220946422094653Coding
48. (ACAA)31221322122132223Coding
49. (GCAA)31221835142183525Non coding
50. (CGCT)31222234182223429Coding
51. (ATGT)31222280292228040Coding
52. (AAAT)31222290032229014Coding
53. (ATAA)31222590892259100Non coding
54. (ACTG)31222989732298984Coding
55. (TTTA)31223323352332346Coding
56. (GGAT)31223985982398609Coding
57. (TATT)31224191722419183Coding
58. (TTAA)31224914192491430Coding-Non coding
59. (GATT)31224958692495880Coding
60. (TTGG)31224973662497377Coding
61. (ATTG)31225363942536405Coding
62. (AAAT)31226984362698447Coding
63. (TTAT)31227044422704453Coding
64. (TTAA)31228203602820371Non coding
65. (GGTT)31228960902896101Coding
66. (GGGT)31230595973059608Coding
67. (ATAA)31230629023062913Coding
68. (ATTT)31230734273073438Non coding
69. (CAGT)31231004383100449Coding
70. (CTCA)31232723413272352Coding
71. (AGCA)31233713123371323Coding
72. (AAAC)31233751913375202Non coding
73. (TCCA)31233976013397612Coding
74. (AATA)31234336343433645Coding
75. (CAAA)31235120213512032Coding
76. (ACTG)31235198923519903Coding
77. (ATTT)31236562863656297Coding
78. (TTAA)31237011533701164Non coding
79. (CCAA)31237913203791331Coding
80. (AATT)31239092133909224Coding
81. (CAAA)31239523993952410Coding
82. (GTTC)31239720763972087Non coding
83. (TAAT)31240232144023225Non coding
84. (TAAT)31241394524139463Non coding
85. (TTTA)31241577014157712Non coding
86. (ATTT)31242339604233971Non coding
87. (TTAT)31242468944246905Non coding
88. (TAAA)31242629404262951Coding
89. (ATTA)31243014894301500Non coding
90. (CCAA)31243214034321414Coding
91. (ACAA)31243297274329738Coding
92. (GCCA)31243471264347137Coding
93. (CAGT)31243774144377425Coding
94. (GAAC)31244410274441038Non coding
95. (ACAG)31245699394569950Coding
96. (ATTT)31245954014595412Non coding
97. (TAAA)31246769124676923Coding
98. (CGCT)31247473104747321Coding
99. (GACT)52048058474805866Non coding
100. (TTTG)31248695834869594Coding
101. (TGTT)31249036364903647Coding
102. (TCTT)31249071274907138Coding
103. (AACA)31249559774955988Coding
104. (TTAC)31249669414966952Coding
105. (GTAA)31249783004978311Coding
106. (AGAA)31250087415008752Coding
107. (CAGT)31250641785064189Coding
108. (ACTG)31251636035163614Coding
109. (ATTT)31251704205170431Coding-Non coding
110. (AATT)31252781025278113Coding-Non coding
111. (TAAC)31252805225280533Coding
112. (GTTC)31252837855283796Non coding
113. (AAAT)31253444805344491Non coding
114. (TTGG)31254385695438580Coding
115. (ACTG)31255087855508796Coding
116. (CAGT)31256020025602013Coding
117. (AAGC)31257354475735458Coding
118. (ATTA)31257457305745741Non coding
119. (TATT)31258490765849087Non coding
120. (AAAT)31258938085893819Non coding
121. (TTAA)31259576395957650Non coding
122. (TGCT)31260854366085447Coding
123. (AATT)31262133266213337Coding
124. (AGTT)31263078356307846Coding-Non coding
125. (AATA)31263100496310060Coding
126. (CAGT)31263148406314851Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.