CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7120 (NC_003272 6413772 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 261     Density of SSR      : 1SSR/ 24.57 kb   Average length of SSR  : 12.7 bp
Coding      : 210     Non-Coding           : 45   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 147 87 11 14 261
IMPERFECT 8 193 2220 1755 190 132 4498
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGG)4121607116082Coding
2. (ATTA)3122079420805Non coding
3. (GTT)4122292722938Coding
4. (TGA)4123057730588Coding
5. (GGT)4125758157592Coding
6. (GATA)3127584375854Non coding
7. (TTCT)3129252692537Coding
8. (AACCAG)318104164104181Coding
9. (GAAA)312144008144019Coding
10. (CAGC)312148608148619Coding
11. (TAAA)312168409168420Non coding
12. (GGC)515168816168830Coding
13. (CGG)412185623185634Coding
14. (GGC)412257243257254Coding
15. (TTG)412283712283723Coding
16. (GTG)412307860307871Coding
17. (TGT)412313315313326Coding
18. (CAAA)312328172328183Coding
19. (TTTA)312337691337702Coding
20. (GATA)312338548338559Coding-Non coding
21. (ATG)412345156345167Coding
22. (ACC)412390490390501Coding-Non coding
23. (CAG)412452390452401Coding
24. (GGA)515454040454054Coding
25. (ATTT)312495021495032Coding-Non coding
26. (GTG)515498354498368Coding
27. (ATG)412530545530556Coding
28. (AGCCCA)318533174533191Coding
29. (GCG)412539865539876Coding
30. (TTG)412548222548233Coding
31. (GTC)412578463578474Coding
32. (TAG)412598829598840Coding
33. (GCT)412621319621330Coding
34. (GGT)412642016642027Coding
35. (AT)612649473649484Coding
36. (GCG)412706465706476Coding
37. (TATG)312712041712052Coding
38. (TAA)412717304717315Non coding
39. (TCAA)312721256721267Coding
40. (GGC)412742717742728Coding
41. (GGC)412758873758884Coding
42. (GAAT)312796997797008Coding-Non coding
43. (GACCA)315844787844801Coding
44. (CGC)515911988912002Coding
45. (TCA)412928101928112Coding
46. (ACTT)312998445998456Coding
47. (GGC)41210274761027487Coding
48. (AATA)31210474331047444Non coding
49. (ACCA)31210779381077949Coding
50. (CCAA)31211021911102202Coding
51. (CTTA)31211328691132880Coding
52. (TCACCA)31811495631149580Coding
53. (CGG)41211880901188101Coding
54. (TAC)41211907851190796Coding
55. (ACT)41212034981203509Coding
56. (CTTC)31212436531243664Coding
57. (TATT)31212580571258068Coding
58. (AGTA)31212638231263834Non coding
59. (AAAC)31212711751271186Coding
60. (CCA)41212796881279699Coding
61. (GGTT)31212854561285467Coding
62. (ATC)41213076051307616Coding
63. (GTT)41213111961311207Coding
64. (CCA)41213194591319470Non coding
65. (TATT)31213362641336275Non coding
66. (TCAG)31214011681401179Coding
67. (TGA)41214769691476980Coding
68. (TTTA)31214781911478202Non coding
69. (AAT)41214843461484357Coding
70. (GGC)41215058161505827Coding
71. (TATT)31215983001598311Non coding
72. (ACC)41216148331614844Coding
73. (AATCC)31516255401625554Coding
74. (CAGAG)31516350101635024Non coding
75. (GAA)41216664001666411Coding
76. (ACTT)31216940611694072Coding
77. (CAC)41217304721730483Coding
78. (ATC)51517346741734688Coding
79. (ACTG)31217587371758748Non coding
80. (GAA)51517914711791485Coding
81. (AAAGGT)42418285921828615Coding
82. (CGC)41219013461901357Coding
83. (TAC)41219126491912660Coding
84. (GTA)41219298211929832Coding
85. (CGG)41220375742037585Coding
86. (GGC)41220400882040099Coding
87. (TGTT)31220586742058685Non coding
88. (ATTA)31220710402071051Non coding
89. (TAA)41220736482073659Coding
90. (ATTT)31220782702078281Coding
91. (TA)61221223592122370Coding
92. (GCG)41221391302139141Coding
93. (TAA)41221465452146556Coding
94. (AAC)41222072382207249Coding
95. (TAAG)31222508352250846Non coding
96. (TGG)41222514082251419Coding
97. (CCCAAC)31822538562253873Coding
98. (AATT)31222546592254670Non coding
99. (ATCC)31222648702264881Coding
100. (CGC)41222793132279324Coding
101. (GGGCA)31523050342305048Non coding
102. (CCG)41223116512311662Coding
103. (GAT)41223282812328292Coding
104. (GTT)41223301422330153Coding
105. (ACC)41223327902332801Coding
106. (GTGG)31223651862365197Coding
107. (CGG)41223971282397139Coding
108. (TGG)41224518542451865Coding
109. (CGC)41224808602480871Coding
110. (GGTT)31224894562489467Coding
111. (TGG)41224955992495610Coding
112. (TATT)31225081192508130Non coding
113. (AGC)41225108162510827Coding
114. (CCG)41225207342520745Coding
115. (GTACA)31525367522536766Coding
116. (AAAAT)31525480792548093Coding
117. (GAA)41226120822612093Coding
118. (AGC)41227272242727235Coding
119. (ATTT)31227567582756769Non coding
120. (GGCGGT)31827856132785630Coding
121. (CAA)41227962082796219Coding
122. (CTG)41228415252841536Coding
123. (GCG)61829039992904016Coding
124. (TTTAC)31529159902916004Coding
125. (TAAC)31229301622930173Coding
126. (CCG)41229334202933431Coding
127. (GATT)31229620232962034Coding
128. (GCTAC)31529779382977952Non coding
129. (GAGAA)42029931742993193Non coding
130. (GGT)41230113803011391Coding
131. (CGC)41230173743017385Coding
132. (TCG)41230214103021421Coding
133. (TAA)41230930613093072Coding
134. (TGGG)31231543913154402Coding
135. (TGG)41232186153218626Coding
136. (TTGG)31232462613246272Coding
137. (TGA)41233575233357534Coding
138. (GAT)41233753663375377Coding
139. (AATGG)31533937983393812Coding
140. (ATTT)31234166893416700Non coding
141. (ATC)41234331733433184Coding
142. (AAT)41234452323445243Coding
143. (AAC)41234796653479676Coding
144. (ATCA)31234860333486044Coding
145. (AAT)41234867343486745Coding
146. (TTGCTT)31834872223487239Coding
147. (TTGT)31234958263495837Coding
148. (TGG)41235470693547080Coding
149. (TGAT)31235614363561447Non coding
150. (ATTT)31235617173561728Non coding
151. (CTG)41236256773625688Coding
152. (TAAG)31236271203627131Non coding
153. (ATT)41236306903630701Coding
154. (GAT)41236348693634880Coding
155. (GGT)41236443963644407Coding
156. (ATG)51536498953649909Coding
157. (GGC)51536848933684907Coding
158. (CGG)51537451763745190Coding
159. (GAA)41237532803753291Coding
160. (TAA)41237579093757920Coding
161. (ATTT)31238191833819194Non coding
162. (TCAA)31238383073838318Coding
163. (ATAA)31238588273858838Non coding
164. (TGT)41238609253860936Non coding
165. (AGC)41238901883890199Non coding
166. (GAAA)31239002453900256Coding
167. (TGG)51540244264024440Coding
168. (TAAA)31240823634082374Coding
169. (TGA)41240974624097473Coding
170. (CAG)41241190624119073Coding
171. (CGC)41241207904120801Coding
172. (CAA)41242124674212478Non coding
173. (GTAT)31242262274226238Non coding
174. (AGC)41242419014241912Coding
175. (GCG)41242864944286505Coding
176. (CCG)41242878674287878Coding
177. (GGTT)31243473084347319Coding
178. (CAAA)31243821694382180Coding
179. (ATT)41243876774387688Coding
180. (ATAA)31244146574414668Non coding
181. (GCTGGC)31844207654420782Coding
182. (AACT)31244660214466032Coding
183. (ATTA)31244999024499913Non coding
184. (TATC)31245072634507274Coding
185. (TTCC)31245416934541704Coding
186. (GCC)41245710484571059Coding
187. (AACA)31246542954654306Coding
188. (GGT)41246561184656129Coding
189. (TTTG)31246927294692740Non coding
190. (ATT)41247142554714266Coding
191. (AAT)41247176734717684Coding
192. (AACA)31247200544720065Coding
193. (GGT)41247219774721988Coding
194. (TGG)51547219914722005Coding
195. (TGGCGG)31847220484722065Coding
196. (TGG)51547220904722104Coding
197. (TGG)41247538124753823Coding
198. (GGC)51547540264754040Coding
199. (TTA)41247633214763332Coding
200. (CGG)41247973604797371Coding
201. (GCCA)31248011044801115Coding
202. (GGT)41248536034853614Coding
203. (GAAA)31249244334924444Coding
204. (GGT)41249267354926746Coding
205. (CCTA)31249607484960759Non coding
206. (TAA)41249733804973391Coding
207. (AATT)31249844544984465Non coding
208. (TATT)31250136915013702Coding
209. (CGGTCG)31850482595048276Coding
210. (CAC)41250514055051416Coding
211. (ATGA)31250995235099534Coding-Non coding
212. (ATGA)31251082565108267Non coding
213. (AGTA)31251123755112386Coding
214. (CCG)41251166875116698Coding
215. (CGC)41251337495133760Coding
216. (TCA)41251709965171007Coding
217. (TTC)41251710495171060Coding
218. (CGT)61851860485186065Coding
219. (ATTT)31252068605206871Coding
220. (TTTATT)31852071005207117Coding
221. (TTCC)31252126965212707Coding
222. (TTGA)31253478485347859Coding
223. (GTT)41253878175387828Coding
224. (GAA)41253948055394816Coding
225. (CAG)41254226945422705Coding
226. (TCT)41254914695491480Coding
227. (GCG)41255296705529681Coding
228. (TCA)41255396365539647Coding
229. (ACTT)31255663825566393Coding-Non coding
230. (ATGGTC)31856284155628432Coding
231. (TATT)31256615075661518Non coding
232. (CTA)41256779245677935Non coding
233. (TTTA)31257649845764995Non coding
234. (GTA)41257686885768699Coding
235. (CGC)41258247055824716Coding
236. (AATGGT)31858856615885678Coding
237. (GTG)41259042455904256Coding
238. (GTAGGT)31859214325921449Coding
239. (TAGA)31259328475932858Coding
240. (CAG)41259759985976009Non coding
241. (CGG)41259913665991377Coding
242. (CGG)41259952955995306Coding
243. (TGGTG)31560366686036682Non coding
244. (TTTC)31260577056057716Coding
245. (CCA)41260630026063013Coding
246. (TTA)41261039756103986Coding
247. (CGA)41261153966115407Coding
248. (TTGA)31261462636146274Coding
249. (CAA)41261490666149077Coding
250. (GTGA)31261679116167922Coding
251. (TATT)31261684406168451Non coding
252. (TTA)41261878366187847Coding
253. (CCG)41262268776226888Coding
254. (TTAA)31262448616244872Coding
255. (ATG)41262818566281867Coding
256. (AAAT)31263238786323889Non coding
257. (ATG)41263240356324046Coding
258. (TGC)51563240586324072Coding
259. (TCA)41263288036328814Coding
260. (TGA)41263470056347016Coding
261. (TTTA)31263682436368254Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.