CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Nostoc sp. PCC 7120 (NC_003272 6413772 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 261     Density of SSR      : 1SSR/ 24.57 kb   Average length of SSR  : 12.7 bp
Coding      : 210     Non-Coding           : 45   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 147 87 11 14 261
IMPERFECT 8 193 2220 1755 190 132 4498
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GACCA)315844787844801Coding
2. (AATCC)31516255401625554Coding
3. (CAGAG)31516350101635024Non coding
4. (GGGCA)31523050342305048Non coding
5. (GTACA)31525367522536766Coding
6. (AAAAT)31525480792548093Coding
7. (TTTAC)31529159902916004Coding
8. (GCTAC)31529779382977952Non coding
9. (GAGAA)42029931742993193Non coding
10. (AATGG)31533937983393812Coding
11. (TGGTG)31560366686036682Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.