CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7120 (NC_003272 6413772 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 261     Density of SSR      : 1SSR/ 24.57 kb   Average length of SSR  : 12.7 bp
Coding      : 210     Non-Coding           : 45   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 147 87 11 14 261
IMPERFECT 8 193 2220 1755 190 132 4498
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGG)4121607116082Coding
2. (GTT)4122292722938Coding
3. (TGA)4123057730588Coding
4. (GGT)4125758157592Coding
5. (GGC)515168816168830Coding
6. (CGG)412185623185634Coding
7. (GGC)412257243257254Coding
8. (TTG)412283712283723Coding
9. (GTG)412307860307871Coding
10. (TGT)412313315313326Coding
11. (ATG)412345156345167Coding
12. (ACC)412390490390501Coding-Non coding
13. (CAG)412452390452401Coding
14. (GGA)515454040454054Coding
15. (GTG)515498354498368Coding
16. (ATG)412530545530556Coding
17. (GCG)412539865539876Coding
18. (TTG)412548222548233Coding
19. (GTC)412578463578474Coding
20. (TAG)412598829598840Coding
21. (GCT)412621319621330Coding
22. (GGT)412642016642027Coding
23. (GCG)412706465706476Coding
24. (TAA)412717304717315Non coding
25. (GGC)412742717742728Coding
26. (GGC)412758873758884Coding
27. (CGC)515911988912002Coding
28. (TCA)412928101928112Coding
29. (GGC)41210274761027487Coding
30. (CGG)41211880901188101Coding
31. (TAC)41211907851190796Coding
32. (ACT)41212034981203509Coding
33. (CCA)41212796881279699Coding
34. (ATC)41213076051307616Coding
35. (GTT)41213111961311207Coding
36. (CCA)41213194591319470Non coding
37. (TGA)41214769691476980Coding
38. (AAT)41214843461484357Coding
39. (GGC)41215058161505827Coding
40. (ACC)41216148331614844Coding
41. (GAA)41216664001666411Coding
42. (CAC)41217304721730483Coding
43. (ATC)51517346741734688Coding
44. (GAA)51517914711791485Coding
45. (CGC)41219013461901357Coding
46. (TAC)41219126491912660Coding
47. (GTA)41219298211929832Coding
48. (CGG)41220375742037585Coding
49. (GGC)41220400882040099Coding
50. (TAA)41220736482073659Coding
51. (GCG)41221391302139141Coding
52. (TAA)41221465452146556Coding
53. (AAC)41222072382207249Coding
54. (TGG)41222514082251419Coding
55. (CGC)41222793132279324Coding
56. (CCG)41223116512311662Coding
57. (GAT)41223282812328292Coding
58. (GTT)41223301422330153Coding
59. (ACC)41223327902332801Coding
60. (CGG)41223971282397139Coding
61. (TGG)41224518542451865Coding
62. (CGC)41224808602480871Coding
63. (TGG)41224955992495610Coding
64. (AGC)41225108162510827Coding
65. (CCG)41225207342520745Coding
66. (GAA)41226120822612093Coding
67. (AGC)41227272242727235Coding
68. (CAA)41227962082796219Coding
69. (CTG)41228415252841536Coding
70. (GCG)61829039992904016Coding
71. (CCG)41229334202933431Coding
72. (GGT)41230113803011391Coding
73. (CGC)41230173743017385Coding
74. (TCG)41230214103021421Coding
75. (TAA)41230930613093072Coding
76. (TGG)41232186153218626Coding
77. (TGA)41233575233357534Coding
78. (GAT)41233753663375377Coding
79. (ATC)41234331733433184Coding
80. (AAT)41234452323445243Coding
81. (AAC)41234796653479676Coding
82. (AAT)41234867343486745Coding
83. (TGG)41235470693547080Coding
84. (CTG)41236256773625688Coding
85. (ATT)41236306903630701Coding
86. (GAT)41236348693634880Coding
87. (GGT)41236443963644407Coding
88. (ATG)51536498953649909Coding
89. (GGC)51536848933684907Coding
90. (CGG)51537451763745190Coding
91. (GAA)41237532803753291Coding
92. (TAA)41237579093757920Coding
93. (TGT)41238609253860936Non coding
94. (AGC)41238901883890199Non coding
95. (TGG)51540244264024440Coding
96. (TGA)41240974624097473Coding
97. (CAG)41241190624119073Coding
98. (CGC)41241207904120801Coding
99. (CAA)41242124674212478Non coding
100. (AGC)41242419014241912Coding
101. (GCG)41242864944286505Coding
102. (CCG)41242878674287878Coding
103. (ATT)41243876774387688Coding
104. (GCC)41245710484571059Coding
105. (GGT)41246561184656129Coding
106. (ATT)41247142554714266Coding
107. (AAT)41247176734717684Coding
108. (GGT)41247219774721988Coding
109. (TGG)51547219914722005Coding
110. (TGG)51547220904722104Coding
111. (TGG)41247538124753823Coding
112. (GGC)51547540264754040Coding
113. (TTA)41247633214763332Coding
114. (CGG)41247973604797371Coding
115. (GGT)41248536034853614Coding
116. (GGT)41249267354926746Coding
117. (TAA)41249733804973391Coding
118. (CAC)41250514055051416Coding
119. (CCG)41251166875116698Coding
120. (CGC)41251337495133760Coding
121. (TCA)41251709965171007Coding
122. (TTC)41251710495171060Coding
123. (CGT)61851860485186065Coding
124. (GTT)41253878175387828Coding
125. (GAA)41253948055394816Coding
126. (CAG)41254226945422705Coding
127. (TCT)41254914695491480Coding
128. (GCG)41255296705529681Coding
129. (TCA)41255396365539647Coding
130. (CTA)41256779245677935Non coding
131. (GTA)41257686885768699Coding
132. (CGC)41258247055824716Coding
133. (GTG)41259042455904256Coding
134. (CAG)41259759985976009Non coding
135. (CGG)41259913665991377Coding
136. (CGG)41259952955995306Coding
137. (CCA)41260630026063013Coding
138. (TTA)41261039756103986Coding
139. (CGA)41261153966115407Coding
140. (CAA)41261490666149077Coding
141. (TTA)41261878366187847Coding
142. (CCG)41262268776226888Coding
143. (ATG)41262818566281867Coding
144. (ATG)41263240356324046Coding
145. (TGC)51563240586324072Coding
146. (TCA)41263288036328814Coding
147. (TGA)41263470056347016Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.