CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7120 (NC_003272 6413772 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 261     Density of SSR      : 1SSR/ 24.57 kb   Average length of SSR  : 12.7 bp
Coding      : 210     Non-Coding           : 45   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 147 87 11 14 261
IMPERFECT 8 193 2220 1755 190 132 4498
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTA)3122079420805Non coding
2. (GATA)3127584375854Non coding
3. (TTCT)3129252692537Coding
4. (GAAA)312144008144019Coding
5. (CAGC)312148608148619Coding
6. (TAAA)312168409168420Non coding
7. (CAAA)312328172328183Coding
8. (TTTA)312337691337702Coding
9. (GATA)312338548338559Coding-Non coding
10. (ATTT)312495021495032Coding-Non coding
11. (TATG)312712041712052Coding
12. (TCAA)312721256721267Coding
13. (GAAT)312796997797008Coding-Non coding
14. (ACTT)312998445998456Coding
15. (AATA)31210474331047444Non coding
16. (ACCA)31210779381077949Coding
17. (CCAA)31211021911102202Coding
18. (CTTA)31211328691132880Coding
19. (CTTC)31212436531243664Coding
20. (TATT)31212580571258068Coding
21. (AGTA)31212638231263834Non coding
22. (AAAC)31212711751271186Coding
23. (GGTT)31212854561285467Coding
24. (TATT)31213362641336275Non coding
25. (TCAG)31214011681401179Coding
26. (TTTA)31214781911478202Non coding
27. (TATT)31215983001598311Non coding
28. (ACTT)31216940611694072Coding
29. (ACTG)31217587371758748Non coding
30. (TGTT)31220586742058685Non coding
31. (ATTA)31220710402071051Non coding
32. (ATTT)31220782702078281Coding
33. (TAAG)31222508352250846Non coding
34. (AATT)31222546592254670Non coding
35. (ATCC)31222648702264881Coding
36. (GTGG)31223651862365197Coding
37. (GGTT)31224894562489467Coding
38. (TATT)31225081192508130Non coding
39. (ATTT)31227567582756769Non coding
40. (TAAC)31229301622930173Coding
41. (GATT)31229620232962034Coding
42. (TGGG)31231543913154402Coding
43. (TTGG)31232462613246272Coding
44. (ATTT)31234166893416700Non coding
45. (ATCA)31234860333486044Coding
46. (TTGT)31234958263495837Coding
47. (TGAT)31235614363561447Non coding
48. (ATTT)31235617173561728Non coding
49. (TAAG)31236271203627131Non coding
50. (ATTT)31238191833819194Non coding
51. (TCAA)31238383073838318Coding
52. (ATAA)31238588273858838Non coding
53. (GAAA)31239002453900256Coding
54. (TAAA)31240823634082374Coding
55. (GTAT)31242262274226238Non coding
56. (GGTT)31243473084347319Coding
57. (CAAA)31243821694382180Coding
58. (ATAA)31244146574414668Non coding
59. (AACT)31244660214466032Coding
60. (ATTA)31244999024499913Non coding
61. (TATC)31245072634507274Coding
62. (TTCC)31245416934541704Coding
63. (AACA)31246542954654306Coding
64. (TTTG)31246927294692740Non coding
65. (AACA)31247200544720065Coding
66. (GCCA)31248011044801115Coding
67. (GAAA)31249244334924444Coding
68. (CCTA)31249607484960759Non coding
69. (AATT)31249844544984465Non coding
70. (TATT)31250136915013702Coding
71. (ATGA)31250995235099534Coding-Non coding
72. (ATGA)31251082565108267Non coding
73. (AGTA)31251123755112386Coding
74. (ATTT)31252068605206871Coding
75. (TTCC)31252126965212707Coding
76. (TTGA)31253478485347859Coding
77. (ACTT)31255663825566393Coding-Non coding
78. (TATT)31256615075661518Non coding
79. (TTTA)31257649845764995Non coding
80. (TAGA)31259328475932858Coding
81. (TTTC)31260577056057716Coding
82. (TTGA)31261462636146274Coding
83. (GTGA)31261679116167922Coding
84. (TATT)31261684406168451Non coding
85. (TTAA)31262448616244872Coding
86. (AAAT)31263238786323889Non coding
87. (TTTA)31263682436368254Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.