CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7524 (NC_019684 6635031 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 277     Density of SSR      : 1SSR/ 23.87 kb   Average length of SSR  : 13.03 bp
Coding      : 222     Non-Coding           : 52   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 159 90 11 15 277
IMPERFECT 1 202 2268 1715 176 203 4565
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AGAT)3127364773658Non coding
2. (TTG)4127615876169Coding
3. (GAA)4129475594766Coding
4. (AAAT)312116920116931Coding
5. (GTT)412139995140006Non coding
6. (GTT)412179976179987Non coding
7. (AATA)312227647227658Coding
8. (GGT)412229342229353Coding
9. (TTTC)312244654244665Non coding
10. (GAA)412245664245675Coding
11. (AGG)412256321256332Coding
12. (TGG)412261504261515Coding
13. (GTT)412288744288755Non coding
14. (CCG)412296639296650Coding
15. (TGA)412380319380330Coding
16. (TCA)412396804396815Coding
17. (TTA)412432388432399Coding
18. (ATGAG)315441164441178Non coding
19. (TCT)412442283442294Coding
20. (ACTT)312444552444563Non coding
21. (AGT)412468285468296Coding
22. (CCTA)312491823491834Coding
23. (GTG)412510536510547Coding
24. (AATT)312567923567934Coding
25. (TATT)312591543591554Non coding
26. (ATTGA)315612269612283Non coding
27. (TATT)312648212648223Coding
28. (GTGGC)315648596648610Non coding
29. (GTA)412658282658293Coding
30. (AGTT)312704194704205Coding
31. (CTTT)312727454727465Coding
32. (AATC)312746921746932Coding
33. (CTG)412759351759362Coding
34. (TTAA)312770320770331Non coding
35. (CTGA)312770494770505Non coding
36. (GGTT)312798256798267Coding
37. (AATT)312850061850072Non coding
38. (CAA)412858363858374Coding
39. (TGC)412873179873190Coding
40. (TTA)412927853927864Coding
41. (ATTT)312964977964988Coding-Non coding
42. (TGGG)312986837986848Coding
43. (TTTAA)315999451999465Non coding
44. (AAT)41210092701009281Coding
45. (AT)61210106981010709Coding-Non coding
46. (GCC)41210588831058894Coding
47. (GCT)41211568151156826Coding
48. (TATT)31212843341284345Non coding
49. (TAT)41213274471327458Coding
50. (TGC)41213688101368821Coding
51. (TGG)41214010011401012Coding
52. (GCAGGT)31814068671406884Coding
53. (GCAGGT)31814076171407634Coding
54. (GCAGGT)31814079861408003Coding
55. (TGG)41214160461416057Coding
56. (GGC)41214160891416100Coding
57. (GGC)123614161041416139Coding
58. (CAG)41214178101417821Coding
59. (GTCA)31214189461418957Coding
60. (CAT)41214443741444385Coding
61. (TTGT)31215228661522877Non coding
62. (GGT)41215546521554663Coding
63. (CTG)41215948651594876Coding
64. (CAGCCC)31815996561599673Coding
65. (TTTG)31216121981612209Coding
66. (CTG)41216168811616892Coding
67. (CCG)41216184231618434Coding
68. (GGTAAC)42416464241646447Coding
69. (TGACTG)31816849141684931Coding
70. (CAT)51517158951715909Coding
71. (CACC)31217253571725368Coding
72. (TAT)41217315471731558Coding
73. (CTG)41217359491735960Coding
74. (CAA)41217962461796257Non coding
75. (AGA)41218092021809213Coding
76. (ATTT)31218490311849042Coding
77. (GGC)41218563441856355Coding
78. (GAAA)31219009831900994Coding
79. (AAAC)31219413771941388Coding
80. (CAG)41219626321962643Coding
81. (TTGT)31219943451994356Non coding
82. (GCC)41219971691997180Coding
83. (CAGT)31220076012007612Coding
84. (GGT)51520154882015502Coding
85. (AAG)41220912392091250Coding
86. (AATT)31221002462100257Coding
87. (CAA)41221597172159728Coding
88. (CAA)41221771702177181Coding
89. (TTG)41222085102208521Coding
90. (TCGGTG)31822709892271006Coding
91. (CGC)41222899752289986Coding
92. (GCC)51522952542295268Coding
93. (TTG)41223486952348706Coding
94. (AGC)41224253122425323Coding
95. (TGAG)31224686912468702Coding
96. (GTA)41224739632473974Coding
97. (ACAA)31225329862532997Coding
98. (TGTAC)31525489162548930Coding
99. (CAT)41225553782555389Coding
100. (CAAACC)31825739342573951Coding
101. (AGA)41225917352591746Coding
102. (ATTT)31226061132606124Coding
103. (TAA)41226239182623929Coding
104. (TAA)41226348832634894Coding
105. (CAG)41226750592675070Coding
106. (ACC)41227263282726339Coding
107. (CAACAC)42427461242746147Coding
108. (AAC)41227567002756711Non coding
109. (TTGG)31227827812782792Coding
110. (ATT)41227850232785034Coding
111. (CGG)41227940012794012Coding
112. (TTAT)31227952742795285Non coding
113. (CAGGTG)31828429992843016Coding
114. (TAAA)31228461292846140Coding
115. (AACC)31228978062897817Coding
116. (CAG)41229228912922902Coding
117. (CTT)41229251792925190Coding
118. (CCG)41229771332977144Coding
119. (ATC)41229794212979432Non coding
120. (TAA)41229848162984827Non coding
121. (TTAT)31230378873037898Coding-Non coding
122. (GCA)41230945273094538Coding
123. (AGA)41231094363109447Non coding
124. (ACT)41231266423126653Coding
125. (AAC)41232045723204583Coding
126. (GATT)31232110013211012Coding
127. (TCAT)31232300593230070Non coding
128. (GGC)51533050983305112Coding
129. (GGC)51533486843348698Coding
130. (TAAT)31233641313364142Non coding
131. (ATG)41234027083402719Coding
132. (CTG)61834027273402744Coding
133. (ATTT)31234148493414860Non coding
134. (CAAT)31234824323482443Coding
135. (CCAA)31235051023505113Coding
136. (AATT)31235079933508004Non coding
137. (TAAG)31235429563542967Coding
138. (GCT)41235481893548200Coding
139. (TGG)51535567333556747Coding
140. (ATTA)31235581883558199Non coding
141. (TGG)41235640883564099Coding
142. (TGT)41235826503582661Non coding
143. (CACCC)31535920913592105Coding
144. (TTTA)31236070363607047Non coding
145. (GAGG)31236125893612600Coding
146. (CAC)41236580863658097Coding
147. (GTC)41237071753707186Coding
148. (AGT)41237835743783585Coding
149. (GCG)41237946113794622Coding
150. (GCC)51537959943796008Coding
151. (CGG)41238262273826238Coding
152. (AATT)31238790523879063Coding
153. (TAA)41238907753890786Coding-Non coding
154. (GCC)41239010973901108Coding
155. (TTG)41239355253935536Coding
156. (GGC)41239675043967515Coding
157. (AAATT)31539687223968736Non coding
158. (TGAC)31239811753981186Coding
159. (GCC)61839840293984046Coding
160. (CAC)61839841093984126Coding
161. (ACC)41239845963984607Coding
162. (CCA)41239891033989114Coding
163. (ACC)41239925673992578Coding
164. (GCC)41240881514088162Coding
165. (GTT)41241512584151269Non coding
166. (GTTT)31241675854167596Coding
167. (TATT)31241858474185858Coding
168. (GCG)41241892194189230Coding
169. (ATTTT)31541966234196637Non coding
170. (GGCT)31242012674201278Coding
171. (GGTT)31242209704220981Coding
172. (ATG)51542611094261123Coding
173. (TTCT)31242707234270734Non coding
174. (AAAT)31242873834287394Coding
175. (TATT)31243124894312500Non coding
176. (TAC)41243378934337904Coding
177. (AGAACC)31843416704341687Coding
178. (CTG)41243468384346849Coding
179. (TAC)41243781664378177Coding
180. (GCG)51544014834401497Coding
181. (ATCT)31244338294433840Coding
182. (AGT)41244557134455724Coding
183. (GGT)41244570304457041Coding
184. (AAC)41244796924479703Coding
185. (CAAC)31244818754481886Coding
186. (TGGT)31246045934604604Coding
187. (GAT)41246203644620375Coding
188. (GAG)41246229614622972Coding
189. (TGG)41246428544642865Coding
190. (TGG)41246483014648312Coding
191. (CTG)41246649174664928Coding
192. (TGGC)31246894024689413Coding
193. (AAG)41247260044726015Coding
194. (AGTACC)42447277754727798Coding
195. (GCA)41247418304741841Coding
196. (TTG)41247432084743219Coding
197. (GCC)41247460714746082Coding
198. (TAA)41247590584759069Non coding
199. (AAAT)31247599644759975Coding
200. (CTGTTG)31847830564783073Coding
201. (TGA)41247891974789208Coding
202. (ATC)51549050324905046Coding
203. (AATT)31249324404932451Coding
204. (GCC)41250366485036659Coding
205. (TGA)41250719145071925Coding
206. (AAGA)31250720445072055Coding
207. (ACG)61850785365078553Coding
208. (TAATT)31551013775101391Non coding
209. (GAA)41251286145128625Coding
210. (GAT)51551286685128682Coding
211. (ACC)41251481085148119Coding
212. (CATA)31251903985190409Coding
213. (ACC)41252264205226431Coding
214. (GAA)41252305385230549Coding
215. (AAAT)31252448085244819Coding
216. (TTA)41253064175306428Coding
217. (GATT)31253083885308399Coding
218. (GGT)41253404405340451Coding
219. (TGG)41253496975349708Coding
220. (CGC)41253704335370444Coding
221. (ATCT)31253864785386489Non coding
222. (TTTA)31253966135396624Non coding
223. (GCT)61854114505411467Coding
224. (GCC)41254614075461418Coding
225. (ATAA)31254737795473790Non coding
226. (ACAG)31255145805514591Coding
227. (AAGG)31255221245522135Coding
228. (CGA)41255963075596318Coding
229. (TATT)31256115415611552Coding
230. (ATAA)31256151565615167Coding
231. (TTCT)31256398595639870Coding
232. (TTTA)31256561385656149Non coding
233. (CTTT)31256796715679682Coding
234. (ACC)51557147675714781Coding
235. (AGC)41257337095733720Coding
236. (GCT)41257519255751936Coding
237. (TAGA)31257542975754308Non coding
238. (TGT)41257550835755094Non coding
239. (CGC)41257581995758210Coding
240. (TTTA)31258455845845595Coding
241. (GTG)41258719385871949Coding
242. (AATA)31259251315925142Coding
243. (TAAA)31259450505945061Non coding
244. (TTC)41259455105945521Coding
245. (GCC)51559821615982175Coding
246. (CAC)41261097046109715Coding
247. (GTT)41261357756135786Coding
248. (TAAA)41661518326151847Non coding
249. (CTT)41262006486200659Coding
250. (GAT)41262209136220924Coding
251. (GAT)41262209376220948Coding
252. (TCTGCT)31862715986271615Coding
253. (TGGTG)31562835016283515Non coding
254. (GTG)41263006396300650Coding
255. (ACCA)31263347596334770Coding
256. (AATC)31263605846360595Non coding
257. (GCC)41263652836365294Coding
258. (TGC)41263991926399203Coding
259. (TTGA)31264120876412098Coding
260. (AT)61264138206413831Non coding
261. (AAC)41264513946451405Coding
262. (CTGA)31264671996467210Coding
263. (AAC)41264851196485130Coding
264. (GTG)41264908376490848Coding
265. (CCAGA)31565335756533589Coding
266. (GCG)51565358386535852Coding
267. (TTA)41265398106539821Coding
268. (GAT)41265501196550130Coding
269. (ATCA)31265678666567877Coding
270. (ATG)51565860166586030Coding
271. (ATG)41265998616599872Coding
272. (AATC)31266124566612467Non coding
273. (AATT)31266127916612802Non coding
274. (CTTA)31266160896616100Non coding
275. (TGA)61866179676617984Non coding
276. (GTTGAT)31866188656618882Coding
277. (GAA)41266229896623000Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.