CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7524 (NC_019684 6635031 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 277     Density of SSR      : 1SSR/ 23.87 kb   Average length of SSR  : 13.03 bp
Coding      : 222     Non-Coding           : 52   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 159 90 11 15 277
IMPERFECT 1 202 2268 1715 176 203 4565
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTG)4127615876169Coding
2. (GAA)4129475594766Coding
3. (GTT)412139995140006Non coding
4. (GTT)412179976179987Non coding
5. (GGT)412229342229353Coding
6. (GAA)412245664245675Coding
7. (AGG)412256321256332Coding
8. (TGG)412261504261515Coding
9. (GTT)412288744288755Non coding
10. (CCG)412296639296650Coding
11. (TGA)412380319380330Coding
12. (TCA)412396804396815Coding
13. (TTA)412432388432399Coding
14. (TCT)412442283442294Coding
15. (AGT)412468285468296Coding
16. (GTG)412510536510547Coding
17. (GTA)412658282658293Coding
18. (CTG)412759351759362Coding
19. (CAA)412858363858374Coding
20. (TGC)412873179873190Coding
21. (TTA)412927853927864Coding
22. (AAT)41210092701009281Coding
23. (GCC)41210588831058894Coding
24. (GCT)41211568151156826Coding
25. (TAT)41213274471327458Coding
26. (TGC)41213688101368821Coding
27. (TGG)41214010011401012Coding
28. (TGG)41214160461416057Coding
29. (GGC)41214160891416100Coding
30. (GGC)123614161041416139Coding
31. (CAG)41214178101417821Coding
32. (CAT)41214443741444385Coding
33. (GGT)41215546521554663Coding
34. (CTG)41215948651594876Coding
35. (CTG)41216168811616892Coding
36. (CCG)41216184231618434Coding
37. (CAT)51517158951715909Coding
38. (TAT)41217315471731558Coding
39. (CTG)41217359491735960Coding
40. (CAA)41217962461796257Non coding
41. (AGA)41218092021809213Coding
42. (GGC)41218563441856355Coding
43. (CAG)41219626321962643Coding
44. (GCC)41219971691997180Coding
45. (GGT)51520154882015502Coding
46. (AAG)41220912392091250Coding
47. (CAA)41221597172159728Coding
48. (CAA)41221771702177181Coding
49. (TTG)41222085102208521Coding
50. (CGC)41222899752289986Coding
51. (GCC)51522952542295268Coding
52. (TTG)41223486952348706Coding
53. (AGC)41224253122425323Coding
54. (GTA)41224739632473974Coding
55. (CAT)41225553782555389Coding
56. (AGA)41225917352591746Coding
57. (TAA)41226239182623929Coding
58. (TAA)41226348832634894Coding
59. (CAG)41226750592675070Coding
60. (ACC)41227263282726339Coding
61. (AAC)41227567002756711Non coding
62. (ATT)41227850232785034Coding
63. (CGG)41227940012794012Coding
64. (CAG)41229228912922902Coding
65. (CTT)41229251792925190Coding
66. (CCG)41229771332977144Coding
67. (ATC)41229794212979432Non coding
68. (TAA)41229848162984827Non coding
69. (GCA)41230945273094538Coding
70. (AGA)41231094363109447Non coding
71. (ACT)41231266423126653Coding
72. (AAC)41232045723204583Coding
73. (GGC)51533050983305112Coding
74. (GGC)51533486843348698Coding
75. (ATG)41234027083402719Coding
76. (CTG)61834027273402744Coding
77. (GCT)41235481893548200Coding
78. (TGG)51535567333556747Coding
79. (TGG)41235640883564099Coding
80. (TGT)41235826503582661Non coding
81. (CAC)41236580863658097Coding
82. (GTC)41237071753707186Coding
83. (AGT)41237835743783585Coding
84. (GCG)41237946113794622Coding
85. (GCC)51537959943796008Coding
86. (CGG)41238262273826238Coding
87. (TAA)41238907753890786Coding-Non coding
88. (GCC)41239010973901108Coding
89. (TTG)41239355253935536Coding
90. (GGC)41239675043967515Coding
91. (GCC)61839840293984046Coding
92. (CAC)61839841093984126Coding
93. (ACC)41239845963984607Coding
94. (CCA)41239891033989114Coding
95. (ACC)41239925673992578Coding
96. (GCC)41240881514088162Coding
97. (GTT)41241512584151269Non coding
98. (GCG)41241892194189230Coding
99. (ATG)51542611094261123Coding
100. (TAC)41243378934337904Coding
101. (CTG)41243468384346849Coding
102. (TAC)41243781664378177Coding
103. (GCG)51544014834401497Coding
104. (AGT)41244557134455724Coding
105. (GGT)41244570304457041Coding
106. (AAC)41244796924479703Coding
107. (GAT)41246203644620375Coding
108. (GAG)41246229614622972Coding
109. (TGG)41246428544642865Coding
110. (TGG)41246483014648312Coding
111. (CTG)41246649174664928Coding
112. (AAG)41247260044726015Coding
113. (GCA)41247418304741841Coding
114. (TTG)41247432084743219Coding
115. (GCC)41247460714746082Coding
116. (TAA)41247590584759069Non coding
117. (TGA)41247891974789208Coding
118. (ATC)51549050324905046Coding
119. (GCC)41250366485036659Coding
120. (TGA)41250719145071925Coding
121. (ACG)61850785365078553Coding
122. (GAA)41251286145128625Coding
123. (GAT)51551286685128682Coding
124. (ACC)41251481085148119Coding
125. (ACC)41252264205226431Coding
126. (GAA)41252305385230549Coding
127. (TTA)41253064175306428Coding
128. (GGT)41253404405340451Coding
129. (TGG)41253496975349708Coding
130. (CGC)41253704335370444Coding
131. (GCT)61854114505411467Coding
132. (GCC)41254614075461418Coding
133. (CGA)41255963075596318Coding
134. (ACC)51557147675714781Coding
135. (AGC)41257337095733720Coding
136. (GCT)41257519255751936Coding
137. (TGT)41257550835755094Non coding
138. (CGC)41257581995758210Coding
139. (GTG)41258719385871949Coding
140. (TTC)41259455105945521Coding
141. (GCC)51559821615982175Coding
142. (CAC)41261097046109715Coding
143. (GTT)41261357756135786Coding
144. (CTT)41262006486200659Coding
145. (GAT)41262209136220924Coding
146. (GAT)41262209376220948Coding
147. (GTG)41263006396300650Coding
148. (GCC)41263652836365294Coding
149. (TGC)41263991926399203Coding
150. (AAC)41264513946451405Coding
151. (AAC)41264851196485130Coding
152. (GTG)41264908376490848Coding
153. (GCG)51565358386535852Coding
154. (TTA)41265398106539821Coding
155. (GAT)41265501196550130Coding
156. (ATG)51565860166586030Coding
157. (ATG)41265998616599872Coding
158. (TGA)61866179676617984Non coding
159. (GAA)41266229896623000Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.