CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Nostoc sp. PCC 7524 (NC_019684 6635031 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 277     Density of SSR      : 1SSR/ 23.87 kb   Average length of SSR  : 13.03 bp
Coding      : 222     Non-Coding           : 52   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 159 90 11 15 277
IMPERFECT 1 202 2268 1715 176 203 4565
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AGAT)3127364773658Non coding
2. (AAAT)312116920116931Coding
3. (AATA)312227647227658Coding
4. (TTTC)312244654244665Non coding
5. (ACTT)312444552444563Non coding
6. (CCTA)312491823491834Coding
7. (AATT)312567923567934Coding
8. (TATT)312591543591554Non coding
9. (TATT)312648212648223Coding
10. (AGTT)312704194704205Coding
11. (CTTT)312727454727465Coding
12. (AATC)312746921746932Coding
13. (TTAA)312770320770331Non coding
14. (CTGA)312770494770505Non coding
15. (GGTT)312798256798267Coding
16. (AATT)312850061850072Non coding
17. (ATTT)312964977964988Coding-Non coding
18. (TGGG)312986837986848Coding
19. (TATT)31212843341284345Non coding
20. (GTCA)31214189461418957Coding
21. (TTGT)31215228661522877Non coding
22. (TTTG)31216121981612209Coding
23. (CACC)31217253571725368Coding
24. (ATTT)31218490311849042Coding
25. (GAAA)31219009831900994Coding
26. (AAAC)31219413771941388Coding
27. (TTGT)31219943451994356Non coding
28. (CAGT)31220076012007612Coding
29. (AATT)31221002462100257Coding
30. (TGAG)31224686912468702Coding
31. (ACAA)31225329862532997Coding
32. (ATTT)31226061132606124Coding
33. (TTGG)31227827812782792Coding
34. (TTAT)31227952742795285Non coding
35. (TAAA)31228461292846140Coding
36. (AACC)31228978062897817Coding
37. (TTAT)31230378873037898Coding-Non coding
38. (GATT)31232110013211012Coding
39. (TCAT)31232300593230070Non coding
40. (TAAT)31233641313364142Non coding
41. (ATTT)31234148493414860Non coding
42. (CAAT)31234824323482443Coding
43. (CCAA)31235051023505113Coding
44. (AATT)31235079933508004Non coding
45. (TAAG)31235429563542967Coding
46. (ATTA)31235581883558199Non coding
47. (TTTA)31236070363607047Non coding
48. (GAGG)31236125893612600Coding
49. (AATT)31238790523879063Coding
50. (TGAC)31239811753981186Coding
51. (GTTT)31241675854167596Coding
52. (TATT)31241858474185858Coding
53. (GGCT)31242012674201278Coding
54. (GGTT)31242209704220981Coding
55. (TTCT)31242707234270734Non coding
56. (AAAT)31242873834287394Coding
57. (TATT)31243124894312500Non coding
58. (ATCT)31244338294433840Coding
59. (CAAC)31244818754481886Coding
60. (TGGT)31246045934604604Coding
61. (TGGC)31246894024689413Coding
62. (AAAT)31247599644759975Coding
63. (AATT)31249324404932451Coding
64. (AAGA)31250720445072055Coding
65. (CATA)31251903985190409Coding
66. (AAAT)31252448085244819Coding
67. (GATT)31253083885308399Coding
68. (ATCT)31253864785386489Non coding
69. (TTTA)31253966135396624Non coding
70. (ATAA)31254737795473790Non coding
71. (ACAG)31255145805514591Coding
72. (AAGG)31255221245522135Coding
73. (TATT)31256115415611552Coding
74. (ATAA)31256151565615167Coding
75. (TTCT)31256398595639870Coding
76. (TTTA)31256561385656149Non coding
77. (CTTT)31256796715679682Coding
78. (TAGA)31257542975754308Non coding
79. (TTTA)31258455845845595Coding
80. (AATA)31259251315925142Coding
81. (TAAA)31259450505945061Non coding
82. (TAAA)41661518326151847Non coding
83. (ACCA)31263347596334770Coding
84. (AATC)31263605846360595Non coding
85. (TTGA)31264120876412098Coding
86. (CTGA)31264671996467210Coding
87. (ATCA)31265678666567877Coding
88. (AATC)31266124566612467Non coding
89. (AATT)31266127916612802Non coding
90. (CTTA)31266160896616100Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.