CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria acuminata PCC 6304 (NC_019693 7689444 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 267     Density of SSR      : 1SSR/ 28.59 kb   Average length of SSR  : 13.84 bp
Coding      : 220     Non-Coding           : 45   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 147 64 13 39 267
IMPERFECT 2 153 1808 1511 208 169 3851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTCTT)318607655607672Coding
2. (GCGGAA)318769440769457Coding
3. (CACCGC)318795244795261Coding
4. (GATGAA)318843134843151Coding
5. (CCGGAA)31810153861015403Coding
6. (TCGTCC)31811876481187665Coding
7. (GGTGTG)42415040201504043Coding
8. (GCGGCT)31816695931669610Coding
9. (CGCAAC)31820307922030809Coding
10. (ACCGCC)31825816782581695Coding
11. (ACCATC)31829089812908998Coding
12. (AGGATG)31829545652954582Coding
13. (GAGGGT)31835123693512386Non coding
14. (CCGGAA)31838856613885678Coding
15. (GTTGGC)31845006764500693Coding
16. (GGTGTT)31845007094500726Coding
17. (CGCCAC)31845398224539839Coding
18. (ACCCGA)53045399074539936Coding
19. (GAACCG)31846275694627586Coding
20. (ACCACA)31847883474788364Coding
21. (GCACCG)31850927005092717Coding
22. (TTCTTG)31854158935415910Coding
23. (AGAGGG)31856900535690070Non coding
24. (GGTGGC)31857571375757154Coding
25. (AAGTCT)31860237256023742Non coding
26. (TTTTCA)63660828656082900Coding
27. (GGCGGT)31861661266166143Coding
28. (TCCTTC)31863933566393373Coding
29. (GAACCC)31864354256435442Coding
30. (GAACCG)31864354946435511Coding
31. (GAACCG)31864355396435556Coding
32. (GAACCG)31865350866535103Coding
33. (TCATGA)31866783356678352Coding
34. (GATGGT)31868427916842808Coding
35. (TCATCC)42470245627024585Coding
36. (AAATAG)42471288587128881Non coding
37. (TTTTAT)31872699977270014Coding
38. (GGGTGC)31872730617273078Coding
39. (CCATCA)31875742337574250Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.