CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria acuminata PCC 6304 (NC_019693 7689444 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 267     Density of SSR      : 1SSR/ 28.59 kb   Average length of SSR  : 13.84 bp
Coding      : 220     Non-Coding           : 45   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 147 64 13 39 267
IMPERFECT 2 153 1808 1511 208 169 3851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CT)61228922903Coding
2. (GACT)3121187711888Coding
3. (CCA)4124629146302Coding
4. (AGC)412123080123091Coding
5. (CTG)412158420158431Coding
6. (GAA)412168519168530Coding
7. (TCT)412192325192336Coding
8. (CAA)412222350222361Coding
9. (TGG)412250110250121Coding
10. (CCG)412323901323912Coding
11. (AGTC)312380450380461Coding
12. (GGC)515502427502441Coding
13. (TCC)515504806504820Coding
14. (CAC)412510633510644Coding
15. (GAT)412523057523068Coding
16. (TCT)412570597570608Coding
17. (GCT)515581527581541Coding
18. (GAA)412586628586639Coding
19. (TTTCTT)318607655607672Coding
20. (AGGA)312608382608393Coding
21. (ATA)412647902647913Coding
22. (TCC)412678965678976Coding
23. (TCCT)312692013692024Non coding
24. (GCAG)312700265700276Coding
25. (AAATC)315701984701998Non coding
26. (CAG)412758035758046Coding
27. (GCGGAA)318769440769457Coding
28. (CACCGC)318795244795261Coding
29. (TCAC)312832724832735Non coding
30. (GATGAA)318843134843151Coding
31. (AGC)412846906846917Coding
32. (GGGT)312948515948526Non coding
33. (CCGGAA)31810153861015403Coding
34. (CTTG)31210596421059653Coding
35. (AAT)41211143991114410Coding
36. (AAT)41211780051178016Coding
37. (TCGTCC)31811876481187665Coding
38. (AGGA)41611972191197234Non coding
39. (GTGG)31212138441213855Coding
40. (ATCC)31212483841248395Coding
41. (TAAA)31212697011269712Coding
42. (GGT)41213273621327373Coding
43. (TACT)31213609961361007Coding-Non coding
44. (TGGC)31213864361386447Coding
45. (GTT)41214547031454714Coding
46. (AGCA)31214691641469175Coding
47. (CCG)41214795551479566Coding
48. (AGGGG)31514819731481987Non coding
49. (ATTT)31214943041494315Coding
50. (CTG)41215039211503932Coding
51. (GGTGTG)42415040201504043Coding
52. (TTGA)31215118621511873Non coding
53. (AAT)41216316991631710Non coding
54. (ACCC)31216384221638433Coding
55. (GCGGCT)31816695931669610Coding
56. (CAT)41217132771713288Coding
57. (TGC)41217700301770041Coding
58. (GGT)41218172901817301Coding
59. (AGA)41219025591902570Coding
60. (CAAA)31219379841937995Coding
61. (CGG)41219725231972534Coding
62. (CGCAAC)31820307922030809Coding
63. (TGG)41220435562043567Coding
64. (AGA)51520707942070808Coding
65. (AACA)31220715972071608Coding
66. (ATAA)31221032922103303Coding
67. (AAATA)31521135802113594Non coding
68. (ATCA)31221165952116606Coding-Non coding
69. (AAT)41221314332131444Coding
70. (GGA)41221574162157427Non coding
71. (GTTG)41622038902203905Coding
72. (AATT)31222413022241313Non coding
73. (ACC)41222809182280929Coding
74. (CCA)41223056582305669Coding
75. (CCA)41223089502308961Coding
76. (TCA)41223100952310106Non coding
77. (GTG)41223649362364947Coding
78. (GTT)41223956182395629Coding
79. (TGG)41224161862416197Coding
80. (TGG)41224162402416251Coding
81. (TGG)41224163182416329Coding
82. (AATT)31224437812443792Coding
83. (CAG)41224439412443952Coding
84. (GAT)41224560372456048Coding
85. (GCT)41224978252497836Coding
86. (ACA)41225379162537927Coding
87. (ACCGCC)31825816782581695Coding
88. (CCA)82425834282583451Coding
89. (ATT)41226356962635707Coding
90. (CCCAA)31526910562691070Coding
91. (CAG)41227140752714086Coding
92. (TGG)41228014212801432Coding
93. (GTT)41228891942889205Coding
94. (ACCATC)31829089812908998Coding
95. (TGG)51529098282909842Coding
96. (AGGATG)31829545652954582Coding
97. (CT)61229627482962759Non coding
98. (TTCC)31230446183044629Non coding
99. (CCG)41230843903084401Coding
100. (TTAA)31230951873095198Non coding
101. (CCAT)31232134163213427Coding
102. (TGC)41232546523254663Coding
103. (TGTTT)31533148973314911Coding
104. (CCG)41233944023394413Coding
105. (TCG)41233977863397797Coding
106. (ATC)41234247953424806Coding
107. (TCA)41234487953448806Coding
108. (AGC)41234653943465405Coding
109. (GAGGGT)31835123693512386Non coding
110. (TCT)41235284513528462Coding
111. (GGTG)31236133813613392Non coding
112. (CCAC)31236140263614037Non coding
113. (GAC)41236178843617895Coding
114. (ATTG)31236278973627908Non coding
115. (GTG)41236570843657095Coding
116. (GAT)41236892973689308Coding
117. (CCA)41237232723723283Coding
118. (CTT)41237579563757967Coding
119. (GCT)41237580023758013Coding
120. (TCA)41237656913765702Coding
121. (AAT)41237945833794594Coding
122. (TGG)41238310563831067Coding
123. (CGG)41238349803834991Coding
124. (TGC)41238513573851368Coding
125. (CCGGAA)31838856613885678Coding
126. (TCCC)31238952353895246Non coding
127. (TTG)41239140713914082Coding
128. (GAT)41239525423952553Coding
129. (TCCA)31239584653958476Coding
130. (GGGA)31239717183971729Non coding
131. (TTA)41240290014029012Coding
132. (TGC)41240499724049983Coding
133. (TCGC)31240618624061873Non coding
134. (AAAT)31240651424065153Non coding
135. (GA)61241011144101125Non coding
136. (ATCCA)31541503574150371Non coding
137. (GGGTT)31541743794174393Coding
138. (CAT)41242030904203101Coding
139. (ATTC)31242537984253809Coding
140. (GTT)41242589234258934Coding
141. (ACA)41242745874274598Coding
142. (CTG)41243306674330678Coding
143. (TCA)72143863754386395Coding
144. (GTCC)31243893064389317Coding
145. (ATC)41243919204391931Coding
146. (ATTT)31244496664449677Coding
147. (GGA)51544852864485300Coding
148. (GTTGGC)31845006764500693Coding
149. (GGTGTT)31845007094500726Coding
150. (CTC)51545141074514121Coding
151. (CGCCAC)31845398224539839Coding
152. (ACCCGA)53045399074539936Coding
153. (GAAT)31245678434567854Coding
154. (ATA)41246110094611020Coding
155. (TGC)51546141864614200Coding
156. (GAACCG)31846275694627586Coding
157. (GCA)41246513634651374Coding
158. (GTG)41247256444725655Coding
159. (ACCACA)31847883474788364Coding
160. (CCA)51548246004824614Coding
161. (ACTGG)31548273244827338Coding
162. (GCGG)41648409124840927Coding
163. (TGT)41248506274850638Coding
164. (TTA)41248805654880576Coding
165. (AAT)41248981114898122Coding
166. (AGC)41249560504956061Coding
167. (CTAC)31249564274956438Coding-Non coding
168. (GTG)41249673444967355Coding
169. (TCA)41249975164997527Coding
170. (TTC)41250358345035845Coding
171. (TGA)41250677755067786Coding
172. (GCACCG)31850927005092717Coding
173. (CGC)41251158515115862Coding
174. (GAT)41251606185160629Coding
175. (AGGGG)31551780535178067Non coding
176. (GCT)41252666205266631Coding
177. (CTG)41252740905274101Coding
178. (TGA)51552988275298841Coding
179. (GGA)41253765505376561Coding
180. (TTCTTG)31854158935415910Coding
181. (GGAG)31254304615430472Coding
182. (GGA)51554717135471727Coding
183. (TAA)41254811705481181Coding
184. (TATT)31254891065489117Non coding
185. (AAC)41255031475503158Coding
186. (AATA)31255118275511838Non coding
187. (TTGT)31255208365520847Coding
188. (TTC)41255517255551736Coding
189. (GCA)41256090755609086Coding
190. (AGAGGG)31856900535690070Non coding
191. (CCG)41257173875717398Coding
192. (GGTGGC)31857571375757154Coding
193. (TTAT)31257732905773301Coding-Non coding
194. (GTG)41257883975788408Coding
195. (CCTCT)31559275795927593Non coding
196. (TTC)72159439165943936Non coding
197. (GGT)51559810435981057Coding
198. (AAGTCT)31860237256023742Non coding
199. (TTTTCA)63660828656082900Coding
200. (GCCT)31260861026086113Coding
201. (CAT)41261605736160584Coding
202. (GGCGGT)31861661266166143Coding
203. (ATC)41261719626171973Coding
204. (TGC)41261720286172039Coding
205. (ATTT)31261919356191946Coding
206. (CAG)41262787236278734Coding
207. (TGG)41263055986305609Coding
208. (TAA)41263236456323656Coding
209. (AATC)31263258966325907Coding
210. (TCCTTC)31863933566393373Coding
211. (GAACCC)31864354256435442Coding
212. (GAACCG)31864354946435511Coding
213. (GAACCG)31864355396435556Coding
214. (GGTTG)31564576606457674Coding
215. (GTG)41265228796522890Coding
216. (GAACCG)31865350866535103Coding
217. (AGTG)31265563056556316Non coding
218. (GTC)41265851226585133Coding
219. (TCT)41266691266669137Coding
220. (TCATGA)31866783356678352Coding
221. (TTAT)31267013276701338Coding
222. (GCC)41267079686707979Coding
223. (CCG)41267130366713047Coding
224. (CAC)41267154966715507Coding
225. (TCCG)31267225006722511Coding
226. (TTTC)83267500236750054Non coding
227. (AGTG)31267505026750513Non coding
228. (GGT)41267829796782990Coding
229. (GCG)41268258686825879Coding
230. (CCA)51568419476841961Coding
231. (GATGGT)31868427916842808Coding
232. (GTG)41268453616845372Coding
233. (TTTA)31268969476896958Non coding
234. (GCA)41269877686987779Coding
235. (AGTG)31270242867024297Coding
236. (TCATCC)42470245627024585Coding
237. (TTAAT)31570544567054470Non coding
238. (AAG)41270694697069480Coding
239. (ATT)41270845427084553Coding
240. (ATCT)31270859047085915Non coding
241. (GAC)41270865207086531Coding
242. (GCTG)31271281607128171Coding
243. (AAATAG)42471288587128881Non coding
244. (TGA)41271628427162853Coding
245. (TTTTAT)31872699977270014Coding
246. (GGGTGC)31872730617273078Coding
247. (TGG)51572731957273209Coding
248. (TCA)41273046257304636Coding
249. (GAT)41273131147313125Coding
250. (GCC)41273227367322747Coding
251. (CTG)41273293027329313Coding
252. (TATC)31273877847387795Non coding
253. (CAG)41274131807413191Coding
254. (CAT)41274132057413216Coding
255. (CCA)41274283837428394Coding
256. (TGAG)52074310347431053Non coding
257. (GGGA)31274311837431194Non coding
258. (AAT)41274599537459964Coding
259. (AGAT)31275260397526050Non coding
260. (CCCAC)31575344357534449Coding
261. (AG)61275683377568348Non coding
262. (CCATCA)31875742337574250Coding
263. (TCA)51575834817583495Coding
264. (CTC)41275836967583707Coding
265. (CCCG)31276248507624861Non coding
266. (CTG)41276793687679379Coding
267. (ACC)41276893037689314Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.