CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Oscillatoria acuminata PCC 6304 (NC_019693 7689444 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 267     Density of SSR      : 1SSR/ 28.59 kb   Average length of SSR  : 13.84 bp
Coding      : 220     Non-Coding           : 45   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 147 64 13 39 267
IMPERFECT 2 153 1808 1511 208 169 3851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAATC)315701984701998Non coding
2. (AGGGG)31514819731481987Non coding
3. (AAATA)31521135802113594Non coding
4. (CCCAA)31526910562691070Coding
5. (TGTTT)31533148973314911Coding
6. (ATCCA)31541503574150371Non coding
7. (GGGTT)31541743794174393Coding
8. (ACTGG)31548273244827338Coding
9. (AGGGG)31551780535178067Non coding
10. (CCTCT)31559275795927593Non coding
11. (GGTTG)31564576606457674Coding
12. (TTAAT)31570544567054470Non coding
13. (CCCAC)31575344357534449Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.