CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Oscillatoria acuminata PCC 6304 (NC_019693 7689444 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 267     Density of SSR      : 1SSR/ 28.59 kb   Average length of SSR  : 13.84 bp
Coding      : 220     Non-Coding           : 45   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 147 64 13 39 267
IMPERFECT 2 153 1808 1511 208 169 3851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCA)4124629146302Coding
2. (AGC)412123080123091Coding
3. (CTG)412158420158431Coding
4. (GAA)412168519168530Coding
5. (TCT)412192325192336Coding
6. (CAA)412222350222361Coding
7. (TGG)412250110250121Coding
8. (CCG)412323901323912Coding
9. (GGC)515502427502441Coding
10. (TCC)515504806504820Coding
11. (CAC)412510633510644Coding
12. (GAT)412523057523068Coding
13. (TCT)412570597570608Coding
14. (GCT)515581527581541Coding
15. (GAA)412586628586639Coding
16. (ATA)412647902647913Coding
17. (TCC)412678965678976Coding
18. (CAG)412758035758046Coding
19. (AGC)412846906846917Coding
20. (AAT)41211143991114410Coding
21. (AAT)41211780051178016Coding
22. (GGT)41213273621327373Coding
23. (GTT)41214547031454714Coding
24. (CCG)41214795551479566Coding
25. (CTG)41215039211503932Coding
26. (AAT)41216316991631710Non coding
27. (CAT)41217132771713288Coding
28. (TGC)41217700301770041Coding
29. (GGT)41218172901817301Coding
30. (AGA)41219025591902570Coding
31. (CGG)41219725231972534Coding
32. (TGG)41220435562043567Coding
33. (AGA)51520707942070808Coding
34. (AAT)41221314332131444Coding
35. (GGA)41221574162157427Non coding
36. (ACC)41222809182280929Coding
37. (CCA)41223056582305669Coding
38. (CCA)41223089502308961Coding
39. (TCA)41223100952310106Non coding
40. (GTG)41223649362364947Coding
41. (GTT)41223956182395629Coding
42. (TGG)41224161862416197Coding
43. (TGG)41224162402416251Coding
44. (TGG)41224163182416329Coding
45. (CAG)41224439412443952Coding
46. (GAT)41224560372456048Coding
47. (GCT)41224978252497836Coding
48. (ACA)41225379162537927Coding
49. (CCA)82425834282583451Coding
50. (ATT)41226356962635707Coding
51. (CAG)41227140752714086Coding
52. (TGG)41228014212801432Coding
53. (GTT)41228891942889205Coding
54. (TGG)51529098282909842Coding
55. (CCG)41230843903084401Coding
56. (TGC)41232546523254663Coding
57. (CCG)41233944023394413Coding
58. (TCG)41233977863397797Coding
59. (ATC)41234247953424806Coding
60. (TCA)41234487953448806Coding
61. (AGC)41234653943465405Coding
62. (TCT)41235284513528462Coding
63. (GAC)41236178843617895Coding
64. (GTG)41236570843657095Coding
65. (GAT)41236892973689308Coding
66. (CCA)41237232723723283Coding
67. (CTT)41237579563757967Coding
68. (GCT)41237580023758013Coding
69. (TCA)41237656913765702Coding
70. (AAT)41237945833794594Coding
71. (TGG)41238310563831067Coding
72. (CGG)41238349803834991Coding
73. (TGC)41238513573851368Coding
74. (TTG)41239140713914082Coding
75. (GAT)41239525423952553Coding
76. (TTA)41240290014029012Coding
77. (TGC)41240499724049983Coding
78. (CAT)41242030904203101Coding
79. (GTT)41242589234258934Coding
80. (ACA)41242745874274598Coding
81. (CTG)41243306674330678Coding
82. (TCA)72143863754386395Coding
83. (ATC)41243919204391931Coding
84. (GGA)51544852864485300Coding
85. (CTC)51545141074514121Coding
86. (ATA)41246110094611020Coding
87. (TGC)51546141864614200Coding
88. (GCA)41246513634651374Coding
89. (GTG)41247256444725655Coding
90. (CCA)51548246004824614Coding
91. (TGT)41248506274850638Coding
92. (TTA)41248805654880576Coding
93. (AAT)41248981114898122Coding
94. (AGC)41249560504956061Coding
95. (GTG)41249673444967355Coding
96. (TCA)41249975164997527Coding
97. (TTC)41250358345035845Coding
98. (TGA)41250677755067786Coding
99. (CGC)41251158515115862Coding
100. (GAT)41251606185160629Coding
101. (GCT)41252666205266631Coding
102. (CTG)41252740905274101Coding
103. (TGA)51552988275298841Coding
104. (GGA)41253765505376561Coding
105. (GGA)51554717135471727Coding
106. (TAA)41254811705481181Coding
107. (AAC)41255031475503158Coding
108. (TTC)41255517255551736Coding
109. (GCA)41256090755609086Coding
110. (CCG)41257173875717398Coding
111. (GTG)41257883975788408Coding
112. (TTC)72159439165943936Non coding
113. (GGT)51559810435981057Coding
114. (CAT)41261605736160584Coding
115. (ATC)41261719626171973Coding
116. (TGC)41261720286172039Coding
117. (CAG)41262787236278734Coding
118. (TGG)41263055986305609Coding
119. (TAA)41263236456323656Coding
120. (GTG)41265228796522890Coding
121. (GTC)41265851226585133Coding
122. (TCT)41266691266669137Coding
123. (GCC)41267079686707979Coding
124. (CCG)41267130366713047Coding
125. (CAC)41267154966715507Coding
126. (GGT)41267829796782990Coding
127. (GCG)41268258686825879Coding
128. (CCA)51568419476841961Coding
129. (GTG)41268453616845372Coding
130. (GCA)41269877686987779Coding
131. (AAG)41270694697069480Coding
132. (ATT)41270845427084553Coding
133. (GAC)41270865207086531Coding
134. (TGA)41271628427162853Coding
135. (TGG)51572731957273209Coding
136. (TCA)41273046257304636Coding
137. (GAT)41273131147313125Coding
138. (GCC)41273227367322747Coding
139. (CTG)41273293027329313Coding
140. (CAG)41274131807413191Coding
141. (CAT)41274132057413216Coding
142. (CCA)41274283837428394Coding
143. (AAT)41274599537459964Coding
144. (TCA)51575834817583495Coding
145. (CTC)41275836967583707Coding
146. (CTG)41276793687679379Coding
147. (ACC)41276893037689314Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.