CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria acuminata PCC 6304 (NC_019693 7689444 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 267     Density of SSR      : 1SSR/ 28.59 kb   Average length of SSR  : 13.84 bp
Coding      : 220     Non-Coding           : 45   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 147 64 13 39 267
IMPERFECT 2 153 1808 1511 208 169 3851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GACT)3121187711888Coding
2. (AGTC)312380450380461Coding
3. (AGGA)312608382608393Coding
4. (TCCT)312692013692024Non coding
5. (GCAG)312700265700276Coding
6. (TCAC)312832724832735Non coding
7. (GGGT)312948515948526Non coding
8. (CTTG)31210596421059653Coding
9. (AGGA)41611972191197234Non coding
10. (GTGG)31212138441213855Coding
11. (ATCC)31212483841248395Coding
12. (TAAA)31212697011269712Coding
13. (TACT)31213609961361007Coding-Non coding
14. (TGGC)31213864361386447Coding
15. (AGCA)31214691641469175Coding
16. (ATTT)31214943041494315Coding
17. (TTGA)31215118621511873Non coding
18. (ACCC)31216384221638433Coding
19. (CAAA)31219379841937995Coding
20. (AACA)31220715972071608Coding
21. (ATAA)31221032922103303Coding
22. (ATCA)31221165952116606Coding-Non coding
23. (GTTG)41622038902203905Coding
24. (AATT)31222413022241313Non coding
25. (AATT)31224437812443792Coding
26. (TTCC)31230446183044629Non coding
27. (TTAA)31230951873095198Non coding
28. (CCAT)31232134163213427Coding
29. (GGTG)31236133813613392Non coding
30. (CCAC)31236140263614037Non coding
31. (ATTG)31236278973627908Non coding
32. (TCCC)31238952353895246Non coding
33. (TCCA)31239584653958476Coding
34. (GGGA)31239717183971729Non coding
35. (TCGC)31240618624061873Non coding
36. (AAAT)31240651424065153Non coding
37. (ATTC)31242537984253809Coding
38. (GTCC)31243893064389317Coding
39. (ATTT)31244496664449677Coding
40. (GAAT)31245678434567854Coding
41. (GCGG)41648409124840927Coding
42. (CTAC)31249564274956438Coding-Non coding
43. (GGAG)31254304615430472Coding
44. (TATT)31254891065489117Non coding
45. (AATA)31255118275511838Non coding
46. (TTGT)31255208365520847Coding
47. (TTAT)31257732905773301Coding-Non coding
48. (GCCT)31260861026086113Coding
49. (ATTT)31261919356191946Coding
50. (AATC)31263258966325907Coding
51. (AGTG)31265563056556316Non coding
52. (TTAT)31267013276701338Coding
53. (TCCG)31267225006722511Coding
54. (TTTC)83267500236750054Non coding
55. (AGTG)31267505026750513Non coding
56. (TTTA)31268969476896958Non coding
57. (AGTG)31270242867024297Coding
58. (ATCT)31270859047085915Non coding
59. (GCTG)31271281607128171Coding
60. (TATC)31273877847387795Non coding
61. (TGAG)52074310347431053Non coding
62. (GGGA)31274311837431194Non coding
63. (AGAT)31275260397526050Non coding
64. (CCCG)31276248507624861Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.