CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria nigro-viridis PCC 7112 (NC_019729 7479015 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 436     Density of SSR      : 1SSR/ 17.08 kb   Average length of SSR  : 14.17 bp
Coding      : 342     Non-Coding           : 91   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 4 170 174 14 73 436
IMPERFECT 15 229 2433 1989 225 281 5172
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTGCCG)318261781261798Coding
2. (GTCGGC)318273826273843Coding
3. (GTCGGC)424273925273948Coding
4. (CCTCCG)424474666474689Coding
5. (GGTGCC)318578537578554Coding
6. (CCGACT)424622562622585Coding
7. (CCGACT)424622610622633Coding
8. (GGTTGT)318656022656039Non coding
9. (GGAAGG)530811333811362Coding
10. (ACTCCG)424987599987622Coding
11. (ACTCCG)424987629987652Coding
12. (GGTGTT)31810411501041167Coding
13. (GGTGTT)31810412461041263Coding
14. (CCCCAA)42412353691235392Coding
15. (AGAGGC)31814980881498105Coding
16. (CTGGGG)31816146431614660Coding
17. (TCAATT)31816880671688084Non coding
18. (ACTCCG)31818278691827886Coding
19. (ACTCCG)31818279111827928Coding
20. (CACCGC)31818713321871349Coding
21. (GTCGGA)42419700291970052Coding
22. (GTCGGA)63619700651970100Coding
23. (GGAGTC)53019701041970133Coding
24. (GGAGTC)31819701521970169Coding
25. (TGTAGT)31819702051970222Coding
26. (ACCAGA)31823025742302591Coding
27. (CCACGA)31824605082460525Coding
28. (GCTACT)31824684992468516Coding
29. (GTCGGA)31824780702478087Coding
30. (GTCGGA)31824825382482555Coding
31. (GGAGTC)31824827752482792Coding
32. (GGAGTT)31824832072483224Coding
33. (GAAGCG)31827828372782854Coding
34. (GGTGGC)31833057033305720Coding
35. (ACGGTG)31833334243333441Coding
36. (CTGTCT)42434356453435668Coding
37. (CTGTCT)42434356993435722Coding
38. (CCGACG)31834789043478921Coding
39. (AGCTTT)31837462363746253Coding
40. (TGGCGG)42437547563754779Coding
41. (GGTGGC)31837549823754999Coding
42. (GGTATT)53037714123771441Non coding
43. (GGAAGG)31839066673906684Non coding
44. (GCCCCA)31839317043931721Coding
45. (GCACCC)31839320643932081Coding
46. (CGTCAA)42444036034403626Coding
47. (AGAAAT)31845552434555260Coding
48. (GGAGTT)74247603694760410Coding
49. (CCCATT)31848183134818330Non coding
50. (CCCTCT)31849213904921407Coding
51. (TGGTGT)31850154255015442Coding
52. (CAGAAG)31851026345102651Coding
53. (GGCATA)53052717175271746Non coding
54. (ACACCC)31853575585357575Coding
55. (ACACCC)31853576845357701Coding
56. (CCGACT)31853629265362943Coding
57. (ACCAAC)42453632885363311Coding
58. (TCTTCC)42453851285385151Coding
59. (AGAGAT)31858395365839553Non coding
60. (CCTCTA)31859603785960395Coding
61. (AGCCAA)31860304976030514Coding
62. (GGGTAA)42461557496155772Non coding
63. (GAAGAC)42463966496396672Coding
64. (GGGATC)31864865066486523Coding
65. (ACACCA)42469672556967278Coding
66. (TGTAGA)31872203657220382Coding
67. (CCGCCA)42472208517220874Coding
68. (CCGGAG)31872881067288123Coding
69. (ACTCCG)31873969417396958Coding
70. (ACTCCG)31873969837397000Coding
71. (ACTCCG)74273970257397066Coding
72. (ACTCCG)31873971337397150Coding
73. (ACTCCG)42473971637397186Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.