CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria nigro-viridis PCC 7112 (NC_019729 7479015 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 436     Density of SSR      : 1SSR/ 17.08 kb   Average length of SSR  : 14.17 bp
Coding      : 342     Non-Coding           : 91   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 4 170 174 14 73 436
IMPERFECT 15 229 2433 1989 225 281 5172
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTGC)31511283161128330Coding
2. (GTAGG)31512579491257963Coding
3. (CAGCG)31516397421639756Coding
4. (AAAGT)31520682722068286Non coding
5. (GAAGA)31531383603138374Non coding
6. (CCCTA)31531987763198790Coding
7. (AAGAG)42033694993369518Non coding
8. (CCCAA)31538190553819069Coding
9. (GGTTT)31538568253856839Coding
10. (GCGGC)31543480094348023Coding
11. (CCCTA)31547698334769847Non coding
12. (TTAAT)42050127045012723Non coding
13. (CAGCC)31550605765060590Coding
14. (CCCTA)31566224656622479Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.