CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria nigro-viridis PCC 7112 (NC_019729 7479015 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 436     Density of SSR      : 1SSR/ 17.08 kb   Average length of SSR  : 14.17 bp
Coding      : 342     Non-Coding           : 91   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 4 170 174 14 73 436
IMPERFECT 15 229 2433 1989 225 281 5172
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTG)4121000510016Coding
2. (AGC)4123615036161Coding
3. (CCA)4124446644477Coding
4. (GTT)4127811678127Coding
5. (GGT)5158173481748Coding
6. (CTG)412130589130600Coding
7. (TGC)412158510158521Coding
8. (AGG)618161926161943Coding
9. (AGG)412161953161964Coding
10. (TCA)515228632228646Coding
11. (CAC)412240364240375Coding
12. (CAC)412277064277075Coding
13. (GCA)515283491283505Coding
14. (CTG)515444291444305Coding
15. (CTC)618537622537639Coding
16. (TAG)412574684574695Non coding
17. (AGC)515586201586215Coding
18. (ATC)412647510647521Coding
19. (CAG)412674170674181Coding
20. (CCG)412697519697530Coding
21. (GAA)412734362734373Coding
22. (CGC)412797918797929Coding
23. (CTG)412812551812562Coding
24. (GCT)412822648822659Coding
25. (TTA)412824082824093Coding
26. (GAT)412856709856720Coding
27. (CTG)412859602859613Coding
28. (GGT)412862923862934Coding
29. (GTG)412864728864739Coding
30. (GCA)412893923893934Coding
31. (TGC)412896600896611Coding
32. (GTG)412908070908081Coding
33. (CTG)412936737936748Coding
34. (AGC)412959497959508Coding
35. (GAT)412990538990549Coding
36. (GAA)41210794421079453Coding
37. (GCT)41211176901117701Coding
38. (GGC)41211498291149840Coding
39. (GCC)41211752291175240Coding
40. (GCG)41211883341188345Coding
41. (TGC)41212367211236732Coding
42. (ATT)175113315841331634Coding
43. (CAA)41213380791338090Coding
44. (CAG)41214236551423666Coding
45. (GCT)41214521051452116Coding
46. (GAA)41214640991464110Coding
47. (AGC)41214788581478869Coding
48. (GCA)41214965521496563Coding
49. (GCA)41215053931505404Coding
50. (CTG)61815465401546557Coding
51. (AAG)41215770301577041Coding
52. (CGC)41216285831628594Coding
53. (GGC)41216379991638010Coding
54. (CTG)41217064001706411Coding
55. (CTG)41217300281730039Coding
56. (CCG)41217577351757746Coding
57. (GCA)41218994531899464Non coding
58. (GGC)41219016451901656Coding
59. (CAT)41219789161978927Coding
60. (TGC)41220421002042111Coding
61. (GCT)41220433252043336Coding
62. (TGC)41220439332043944Coding
63. (TGC)41221474842147495Coding
64. (GCG)41221860262186037Coding
65. (GCG)41221901242190135Non coding
66. (TGC)41222150762215087Coding
67. (CCG)41222716962271707Coding
68. (GCT)41223377772337788Coding
69. (TAC)41225168672516878Non coding
70. (TAA)41226220522622063Non coding
71. (TAT)51526527042652718Non coding
72. (CTG)41226551752655186Coding
73. (GCT)41226853752685386Coding
74. (GCG)41227079282707939Coding
75. (GCT)41227191952719206Coding
76. (CAC)41227724212772432Coding
77. (TGC)41228004112800422Coding
78. (TGC)41228313692831380Coding
79. (GGC)51528361302836144Coding
80. (GAC)41229093692909380Coding
81. (CTG)41229427572942768Coding
82. (GAA)41229489782948989Coding
83. (AAG)41230491073049118Coding
84. (TGC)51531126103112624Coding
85. (GGC)41233058373305848Coding
86. (CGG)41233126463312657Coding
87. (AGC)41233421833342194Coding
88. (TTA)41233489533348964Coding
89. (TTG)41233946403394651Coding
90. (GCA)41234047173404728Coding
91. (GCG)61834505273450544Coding
92. (CGG)51534512783451292Coding
93. (TGC)41235347093534720Coding
94. (CAA)41236037863603797Coding
95. (TGG)41236156643615675Coding
96. (GCT)72136158793615899Coding
97. (CGG)41236889993689010Coding
98. (CGG)41237392913739302Coding
99. (TTG)41238183333818344Coding
100. (CAG)41238761653876176Coding
101. (CCG)41238865463886557Coding
102. (GAA)41239570083957019Coding
103. (GCT)72140327274032747Coding
104. (ATT)41240719184071929Non coding
105. (CTG)41240721704072181Coding
106. (ACT)41240783654078376Coding
107. (GAT)51540969194096933Coding
108. (CTT)41242047404204751Coding
109. (TGC)61842388474238864Coding
110. (GAA)41242698764269887Coding
111. (GCA)51543394174339431Coding
112. (GCT)41244095454409556Coding
113. (CTA)41244238934423904Coding
114. (CAT)41244491924449203Coding
115. (TGC)41244846764484687Coding
116. (CAG)41245744504574461Coding
117. (GGC)51545892644589278Coding
118. (CTG)41246129514612962Coding
119. (CAG)41246165314616542Coding
120. (TTG)41246240414624052Coding
121. (GCC)41246671474667158Coding
122. (GCG)41247296794729690Coding
123. (CAC)51548620084862022Coding
124. (AGT)41249043154904326Coding
125. (CGC)41249166524916663Coding
126. (TGG)41249943054994316Coding
127. (CTG)41250427115042722Coding
128. (CGG)41251159355115946Coding
129. (GAT)41251390395139050Coding
130. (AGC)41251620885162099Coding
131. (TCA)41252673815267392Coding
132. (CCT)61852709185270935Coding
133. (TGC)41253671185367129Coding
134. (CTG)41253967745396785Coding
135. (TGC)41254477005447711Coding
136. (GCA)51554676795467693Coding
137. (GCA)41257250435725054Coding
138. (GCA)41258600205860031Coding
139. (GCA)41258642905864301Coding
140. (CTG)41259190185919029Coding
141. (CGC)41259271905927201Coding
142. (GCT)41259546185954629Coding
143. (CGG)41263550456355056Coding
144. (TAT)41264223876422398Non coding
145. (GGC)41264321126432123Coding
146. (AGG)41264403356440346Coding
147. (CAG)41264939436493954Coding
148. (AGA)41265525836552594Coding
149. (CGG)41265830946583105Coding
150. (GGT)41266016476601658Coding
151. (ACA)41266246466624657Non coding
152. (GCG)41266695696669580Coding
153. (CAA)41266847586684769Coding
154. (GGC)41266881766688187Coding
155. (GCT)41267364126736423Coding
156. (TGT)41267661126766123Coding
157. (GTG)41270431657043176Coding
158. (CGC)51571040277104041Coding
159. (GAA)41271392487139259Coding
160. (TGC)41271414427141453Coding
161. (TTC)41271887237188734Coding
162. (CCG)41272247147224725Coding
163. (TGG)41272412707241281Coding
164. (CTG)41272477577247768Coding
165. (CGC)41273777837377794Coding
166. (GCT)41273810277381038Coding
167. (CAG)41273929547392965Coding
168. (CAA)41274016397401650Coding
169. (TGC)41274168027416813Coding
170. (CGC)41274487517448762Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.