CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Oscillatoria nigro-viridis PCC 7112 (NC_019729 7479015 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 436     Density of SSR      : 1SSR/ 17.08 kb   Average length of SSR  : 14.17 bp
Coding      : 342     Non-Coding           : 91   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 4 170 174 14 73 436
IMPERFECT 15 229 2433 1989 225 281 5172
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GATC)3121050610517Coding
2. (CCTG)3124740347414Non coding
3. (CTAT)3126950069511Non coding
4. (AAAT)3128523185242Non coding
5. (TTAT)3129937999390Coding
6. (AATT)312132756132767Coding
7. (CGCC)312133406133417Coding
8. (TTGA)312136043136054Coding
9. (AATC)312210622210633Coding
10. (CAAA)312377169377180Non coding
11. (TATT)312390173390184Coding
12. (TCCT)312412519412530Non coding
13. (TTTC)312534674534685Non coding
14. (TTGC)416585960585975Coding
15. (ATTG)416658553658568Coding-Non coding
16. (AGAA)312663385663396Non coding
17. (AGTT)312665088665099Coding
18. (CGCC)312689927689938Non coding
19. (ATAA)312704751704762Coding
20. (GCTT)312740207740218Coding
21. (GATC)312782680782691Coding
22. (GCTG)312822052822063Coding
23. (ATTG)312917765917776Non coding
24. (TCGA)312922766922777Coding
25. (TTAA)312957596957607Non coding
26. (TTAA)31210162161016227Non coding
27. (GTCT)31210465831046594Non coding
28. (AATA)31210620051062016Coding
29. (TTGA)31211487021148713Non coding
30. (GATC)31211874011187412Coding
31. (ACAG)31212328811232892Coding
32. (CCCG)31213025811302592Non coding
33. (AATA)31213204561320467Coding
34. (TTTG)31213425991342610Coding
35. (GACA)31213499991350010Coding
36. (ATTG)31214000981400109Non coding
37. (ATCC)31214264951426506Coding
38. (TAAA)31215115631511574Non coding
39. (AGGT)31216539771653988Coding
40. (GCTT)31216763711676382Non coding
41. (CGAT)31217240241724035Coding
42. (ACGG)31218489591848970Non coding
43. (CCAG)31218894281889439Non coding
44. (CTGG)31220687482068759Coding
45. (CCCT)31220706702070681Coding
46. (CTTC)31220894142089425Non coding
47. (GTGG)31220979792097990Non coding
48. (ACTG)31221691602169171Coding
49. (CAAA)31222371512237162Non coding
50. (ACAA)31222673712267382Coding
51. (CCCG)31222757102275721Non coding
52. (GCTG)31224228022422813Coding
53. (GCTG)31224847732484784Coding
54. (CGGG)31225510302551041Non coding
55. (TTTG)31225680822568093Coding
56. (AATA)31226075972607608Coding
57. (ATTG)41626559622655977Non coding
58. (ACCA)31226648852664896Non coding
59. (AATC)31227171152717126Coding
60. (CGAT)31227268462726857Non coding
61. (ATTA)31227522162752227Non coding
62. (TTTA)31227744022774413Coding
63. (CGAT)31227916012791612Coding
64. (GTTT)31228211932821204Coding
65. (GCCC)31229102552910266Coding
66. (ACTC)31229528562952867Coding
67. (TCGA)31229569232956934Coding
68. (AACC)31229869692986980Coding
69. (GTTT)31229992732999284Coding
70. (TGAG)31230397183039729Coding
71. (CCCG)31230887163088727Non coding
72. (TGAA)31231054663105477Coding-Non coding
73. (CTGA)31231194593119470Coding
74. (ACTG)31231309583130969Coding
75. (CGAT)31233781953378206Coding
76. (CCAG)31234474403447451Coding
77. (GATC)31234863843486395Coding
78. (CAAT)31235085773508588Non coding
79. (ACGC)31235270193527030Non coding
80. (TCGC)31235485493548560Coding
81. (AGCA)31236102043610215Coding
82. (TTAA)31236344023634413Non coding
83. (CAAC)31236980993698110Non coding
84. (ACTT)31237222893722300Non coding
85. (CGGG)31237723243772335Non coding
86. (ACAA)31237900913790102Coding
87. (AATT)31237955893795600Coding
88. (TAAA)31238256053825616Non coding
89. (GAAG)31238365353836546Coding
90. (TTTC)31238803443880355Non coding
91. (ATCG)31239917453991756Coding
92. (AATT)31240833034083314Non coding
93. (CGAT)31241922324192243Coding
94. (TCGA)31241992664199277Non coding
95. (GATC)31242049994205010Coding
96. (GATC)31242090504209061Coding
97. (GGAG)31242198284219839Coding
98. (CGAT)31242207194220730Coding
99. (ATCG)31242228224222833Coding
100. (TACT)31243237744323785Coding
101. (TTTA)31243402074340218Non coding
102. (AATT)31243502004350211Coding
103. (ATCG)31244681434468154Coding
104. (CCTT)31244813414481352Coding
105. (ATCG)31244976944497705Coding
106. (TCGA)31245660184566029Coding
107. (ATTA)31245815674581578Non coding
108. (GCCA)31246045334604544Non coding
109. (AATT)31246147664614777Coding-Non coding
110. (AGCA)31246958174695828Coding
111. (AATT)31247631024763113Non coding
112. (CGAT)31248150984815109Non coding
113. (ATCG)31248203764820387Coding
114. (TAAG)31248432814843292Coding-Non coding
115. (CGAT)31249134094913420Coding
116. (ATCG)31249260704926081Non coding
117. (AGCA)31249560744956085Coding
118. (GACA)31250347215034732Coding
119. (GGCT)31250391265039137Coding
120. (TTTG)31250706265070637Coding
121. (GAAA)31250720385072049Coding
122. (TGAT)31250855685085579Coding
123. (ATTA)31250927075092718Coding
124. (TACT)31251122095112220Coding
125. (ACAA)31251246595124670Non coding
126. (CTTC)31252148905214901Non coding
127. (GCCT)31252725655272576Non coding
128. (GCTT)31253437545343765Coding
129. (TGCT)31253708405370851Coding
130. (GTTT)31254254535425464Coding
131. (GGCG)31254403575440368Coding
132. (GATC)31255007975500808Coding
133. (CGAT)31255593105559321Coding
134. (TTTA)31255684055568416Coding
135. (CGAT)31255837195583730Coding
136. (TCGA)31255993985599409Non coding
137. (ATTC)31255996005599611Coding
138. (GCAG)31256766695676680Non coding
139. (TGGA)31257137215713732Coding
140. (TGCG)31257888655788876Non coding
141. (TATC)31258675865867597Coding
142. (TATC)31258715315871542Coding
143. (AATC)31259457455945756Non coding
144. (GATT)41659470545947069Non coding
145. (GATT)41659470905947105Non coding
146. (GCGA)31259808115980822Non coding
147. (TTAC)31260218276021838Non coding
148. (TAGA)31261691726169183Non coding
149. (TTAT)31262457946245805Non coding
150. (TGAC)31262498486249859Non coding
151. (CGAT)31262779096277920Coding
152. (GATC)31262941586294169Coding
153. (ACCC)31264330576433068Non coding
154. (CCCA)31264753806475391Non coding
155. (TTGC)31264968506496861Coding
156. (TCGA)31265929146592925Coding
157. (AATT)31266467876646798Coding
158. (ACCC)31266633166663327Coding
159. (AATT)31267130816713092Coding
160. (AAGG)31267623666762377Coding
161. (TCGA)31267652226765233Coding
162. (GCCC)31268441626844173Non coding
163. (GCTC)31269402866940297Non coding
164. (GCTC)31269411166941127Coding
165. (CCTG)31269439806943991Coding
166. (GATT)31269440216944032Coding
167. (GCTG)31269750826975093Coding
168. (CGAT)31270447317044742Coding
169. (GCAA)31271786267178637Coding
170. (CGGG)31273047817304792Coding
171. (GGGC)31273542267354237Coding
172. (TCAG)31273544987354509Non coding
173. (TGGT)31273665817366592Coding
174. (ATTG)31274058207405831Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.