CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pleurocapsa sp. PCC 7327 (NC_019689 4986818 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 186     Density of SSR      : 1SSR/ 26.81 kb   Average length of SSR  : 12.6 bp
Coding      : 131     Non-Coding           : 50   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 61 108 6 7 186
IMPERFECT 7 161 1334 1443 151 111 3207
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCAA)3122757327584Non coding
2. (TTGCAA)4244173141754Non coding
3. (GCA)4126363363644Coding
4. (ACAG)312112582112593Coding
5. (TATT)312114010114021Non coding
6. (CGAA)312117116117127Coding
7. (CGG)412144268144279Coding
8. (GAA)412145314145325Coding
9. (AACA)312157274157285Non coding
10. (TGC)412168785168796Coding
11. (CCAA)312174501174512Coding
12. (TTGT)312216333216344Non coding
13. (TATC)312226682226693Coding
14. (TTTC)312251552251563Non coding
15. (TGT)412264146264157Non coding
16. (GCC)412281545281556Coding
17. (ATG)412287902287913Coding
18. (ATTC)312313898313909Non coding
19. (GCC)412323262323273Coding
20. (GAA)412332678332689Non coding
21. (AACG)312343888343899Coding
22. (CCG)412348176348187Coding
23. (TAAA)312398847398858Coding
24. (GCGG)312462880462891Coding
25. (TCTA)312494773494784Coding
26. (ATTT)312502208502219Non coding
27. (TCTG)312506190506201Coding
28. (CTCG)312509339509350Non coding
29. (AGAA)312560741560752Coding
30. (AGA)412581857581868Coding
31. (CAG)412635123635134Coding
32. (AACA)312648328648339Coding
33. (AAAT)312661862661873Non coding
34. (TTAA)312663478663489Coding-Non coding
35. (GCCA)520683641683660Non coding
36. (CAAG)312699314699325Coding
37. (CAA)412710463710474Coding
38. (CTC)412725179725190Coding
39. (CTT)412778434778445Coding
40. (CGAT)312789276789287Non coding
41. (TCGC)312793004793015Coding
42. (CAAA)312813207813218Coding
43. (TGTT)312832233832244Non coding
44. (AAG)412893682893693Coding
45. (TTGC)312947709947720Coding
46. (CAGT)31210151421015153Non coding
47. (CAGT)31210151801015191Non coding
48. (AAGCCG)31810449931045010Coding
49. (AGA)41210779601077971Coding
50. (TAGA)31210977371097748Coding
51. (ACA)41211428681142879Coding
52. (GTTG)31211456581145669Coding
53. (GCTG)31211508401150851Coding
54. (TAGT)31211639191163930Non coding
55. (TTTA)31211967641196775Coding
56. (GACG)31212189411218952Coding
57. (TTC)41212216851221696Coding
58. (AACT)31212455011245512Coding
59. (CGAC)31212615251261536Coding
60. (TTGT)31213665621366573Coding-Non coding
61. (CTCA)31214158551415866Non coding
62. (CTAA)31214182381418249Non coding
63. (AAT)41214204611420472Coding
64. (TATT)31214397051439716Non coding
65. (TAGAA)31514974921497506Non coding
66. (AAATT)31515230421523056Coding
67. (CAAA)31215698951569906Coding
68. (GCTG)31216116471611658Coding
69. (TTC)41216700491670060Coding
70. (AGC)41217524091752420Coding
71. (AACGC)31517595961759610Non coding
72. (ATTT)31217830321783043Coding
73. (CGAC)31218095021809513Coding
74. (TTGC)31218365121836523Non coding
75. (ACGA)31219652521965263Coding
76. (TATT)31219987621998773Coding
77. (CTA)41220185252018536Coding
78. (AGCG)31220259742025985Non coding
79. (CTG)41220278832027894Coding
80. (TCG)41221727642172775Coding
81. (AACC)31221740722174083Coding
82. (TGTT)31221919432191954Coding
83. (AAGG)31222693172269328Non coding
84. (CTCG)31222729642272975Non coding
85. (TGC)41222906172290628Coding
86. (TCCG)31223225782322589Coding
87. (TTAT)31223483392348350Non coding
88. (AGTT)31224081202408131Coding-Non coding
89. (AAG)41224194402419451Coding
90. (CTG)41224585022458513Coding
91. (AGCC)31224817702481781Coding
92. (CAAACC)31825127552512772Coding
93. (GCG)41225332572533268Coding
94. (TC)61225640572564068Coding
95. (GCC)41226484282648439Coding
96. (GCTG)31226554712655482Non coding
97. (CGAT)31226796762679687Non coding
98. (CAT)41226910162691027Coding
99. (TTTG)31227000612700072Coding
100. (AAGA)31227964002796411Coding
101. (GCGA)31228217132821724Coding
102. (CTCTCG)31828520782852095Coding
103. (GCG)41228892662889277Coding
104. (TAGC)31229023202902331Non coding
105. (AGC)41229222612922272Non coding
106. (AATA)31229257792925790Coding
107. (CGAT)41629318332931848Non coding
108. (ACAA)31229560282956039Coding
109. (GTGTG)63029636032963632Non coding
110. (AGAA)31229789382978949Non coding
111. (ACAG)31230368603036871Coding
112. (A)121230584063058417Non coding
113. (AACT)31230673943067405Non coding
114. (AAGC)31230937053093716Coding
115. (CGGG)31231001573100168Coding
116. (CGATCG)31831187203118737Non coding
117. (TTAA)31231707063170717Non coding
118. (ATCG)31231838603183871Coding
119. (AGA)41232166413216652Coding
120. (GCTC)31232223943222405Coding
121. (CGAT)31232506373250648Coding
122. (TCG)41232631683263179Coding
123. (TAAA)31233059283305939Non coding
124. (AT)81633826823382697Non coding
125. (GCAG)31233892163389227Coding
126. (GAA)51533895823389596Coding
127. (ACG)41234463333446344Coding
128. (CAG)41234469923447003Coding
129. (TAT)41234780843478095Coding
130. (AAG)41234999603499971Coding
131. (ACA)41235239763523987Coding
132. (TGTGA)31535684783568492Non coding
133. (ACT)41235977703597781Coding
134. (TAAA)41636097703609785Coding
135. (CGC)41236154163615427Coding
136. (CGC)41236155423615553Coding
137. (GCAA)31236649263664937Coding
138. (GTAAA)31536677323667746Non coding
139. (TTC)41236708763670887Coding
140. (GAGC)31237256533725664Coding
141. (AGGG)31237607603760771Coding
142. (CGA)41238043623804373Coding
143. (CAGG)31239312853931296Coding
144. (GGTT)31240061204006131Coding
145. (CCGA)31240115574011568Coding
146. (CTT)41240248744024885Coding
147. (TGC)41240289384028949Coding
148. (TTTC)41640870854087100Coding
149. (GTCA)31240966044096615Coding
150. (ATAA)31241052234105234Coding
151. (TTA)41241688994168910Coding
152. (TTG)41241726244172635Coding
153. (TTG)41242119124211923Coding
154. (GCA)41242152384215249Coding
155. (CTT)41242531234253134Coding
156. (GTC)41242839684283979Coding
157. (CGAT)41643515104351525Non coding
158. (TATT)31243729904373001Non coding
159. (GCTG)31243766274376638Coding
160. (CGG)41243771084377119Coding
161. (GCCT)31243940454394056Non coding
162. (AAGA)31244208244420835Non coding
163. (ACGA)31244933354493346Coding
164. (ATCG)31245251624525173Coding
165. (TCC)41245673894567400Coding
166. (TTTA)31245717414571752Non coding
167. (ATAA)31245988034598814Non coding
168. (TAAA)31246212384621249Coding
169. (TAA)41246769684676979Coding
170. (TTTA)31246887654688776Coding
171. (AG)61247075804707591Coding
172. (TGC)41247240574724068Coding
173. (AAGC)31247304044730415Coding
174. (TCT)41247310064731017Coding
175. (AAGC)31247436574743668Coding
176. (AAAC)31247944444794455Non coding
177. (GGTT)31248326064832617Coding
178. (GCTA)31248453764845387Coding-Non coding
179. (CCTT)31249043914904402Coding
180. (TCGCCG)31849089074908924Coding
181. (CGC)41249093434909354Coding
182. (AAT)41249165614916572Coding
183. (ATCG)31249429444942955Coding
184. (GCGA)31249651084965119Coding
185. (ATCGCG)31849687664968783Coding
186. (TTGA)31249784414978452Coding-Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.