CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pleurocapsa sp. PCC 7327 (NC_019689 4986818 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 186     Density of SSR      : 1SSR/ 26.81 kb   Average length of SSR  : 12.6 bp
Coding      : 131     Non-Coding           : 50   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 61 108 6 7 186
IMPERFECT 7 161 1334 1443 151 111 3207
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)4126363363644Coding
2. (CGG)412144268144279Coding
3. (GAA)412145314145325Coding
4. (TGC)412168785168796Coding
5. (TGT)412264146264157Non coding
6. (GCC)412281545281556Coding
7. (ATG)412287902287913Coding
8. (GCC)412323262323273Coding
9. (GAA)412332678332689Non coding
10. (CCG)412348176348187Coding
11. (AGA)412581857581868Coding
12. (CAG)412635123635134Coding
13. (CAA)412710463710474Coding
14. (CTC)412725179725190Coding
15. (CTT)412778434778445Coding
16. (AAG)412893682893693Coding
17. (AGA)41210779601077971Coding
18. (ACA)41211428681142879Coding
19. (TTC)41212216851221696Coding
20. (AAT)41214204611420472Coding
21. (TTC)41216700491670060Coding
22. (AGC)41217524091752420Coding
23. (CTA)41220185252018536Coding
24. (CTG)41220278832027894Coding
25. (TCG)41221727642172775Coding
26. (TGC)41222906172290628Coding
27. (AAG)41224194402419451Coding
28. (CTG)41224585022458513Coding
29. (GCG)41225332572533268Coding
30. (GCC)41226484282648439Coding
31. (CAT)41226910162691027Coding
32. (GCG)41228892662889277Coding
33. (AGC)41229222612922272Non coding
34. (AGA)41232166413216652Coding
35. (TCG)41232631683263179Coding
36. (GAA)51533895823389596Coding
37. (ACG)41234463333446344Coding
38. (CAG)41234469923447003Coding
39. (TAT)41234780843478095Coding
40. (AAG)41234999603499971Coding
41. (ACA)41235239763523987Coding
42. (ACT)41235977703597781Coding
43. (CGC)41236154163615427Coding
44. (CGC)41236155423615553Coding
45. (TTC)41236708763670887Coding
46. (CGA)41238043623804373Coding
47. (CTT)41240248744024885Coding
48. (TGC)41240289384028949Coding
49. (TTA)41241688994168910Coding
50. (TTG)41241726244172635Coding
51. (TTG)41242119124211923Coding
52. (GCA)41242152384215249Coding
53. (CTT)41242531234253134Coding
54. (GTC)41242839684283979Coding
55. (CGG)41243771084377119Coding
56. (TCC)41245673894567400Coding
57. (TAA)41246769684676979Coding
58. (TGC)41247240574724068Coding
59. (TCT)41247310064731017Coding
60. (CGC)41249093434909354Coding
61. (AAT)41249165614916572Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.