CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pleurocapsa sp. PCC 7327 (NC_019689 4986818 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 186     Density of SSR      : 1SSR/ 26.81 kb   Average length of SSR  : 12.6 bp
Coding      : 131     Non-Coding           : 50   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 3 61 108 6 7 186
IMPERFECT 7 161 1334 1443 151 111 3207
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCAA)3122757327584Non coding
2. (ACAG)312112582112593Coding
3. (TATT)312114010114021Non coding
4. (CGAA)312117116117127Coding
5. (AACA)312157274157285Non coding
6. (CCAA)312174501174512Coding
7. (TTGT)312216333216344Non coding
8. (TATC)312226682226693Coding
9. (TTTC)312251552251563Non coding
10. (ATTC)312313898313909Non coding
11. (AACG)312343888343899Coding
12. (TAAA)312398847398858Coding
13. (GCGG)312462880462891Coding
14. (TCTA)312494773494784Coding
15. (ATTT)312502208502219Non coding
16. (TCTG)312506190506201Coding
17. (CTCG)312509339509350Non coding
18. (AGAA)312560741560752Coding
19. (AACA)312648328648339Coding
20. (AAAT)312661862661873Non coding
21. (TTAA)312663478663489Coding-Non coding
22. (GCCA)520683641683660Non coding
23. (CAAG)312699314699325Coding
24. (CGAT)312789276789287Non coding
25. (TCGC)312793004793015Coding
26. (CAAA)312813207813218Coding
27. (TGTT)312832233832244Non coding
28. (TTGC)312947709947720Coding
29. (CAGT)31210151421015153Non coding
30. (CAGT)31210151801015191Non coding
31. (TAGA)31210977371097748Coding
32. (GTTG)31211456581145669Coding
33. (GCTG)31211508401150851Coding
34. (TAGT)31211639191163930Non coding
35. (TTTA)31211967641196775Coding
36. (GACG)31212189411218952Coding
37. (AACT)31212455011245512Coding
38. (CGAC)31212615251261536Coding
39. (TTGT)31213665621366573Coding-Non coding
40. (CTCA)31214158551415866Non coding
41. (CTAA)31214182381418249Non coding
42. (TATT)31214397051439716Non coding
43. (CAAA)31215698951569906Coding
44. (GCTG)31216116471611658Coding
45. (ATTT)31217830321783043Coding
46. (CGAC)31218095021809513Coding
47. (TTGC)31218365121836523Non coding
48. (ACGA)31219652521965263Coding
49. (TATT)31219987621998773Coding
50. (AGCG)31220259742025985Non coding
51. (AACC)31221740722174083Coding
52. (TGTT)31221919432191954Coding
53. (AAGG)31222693172269328Non coding
54. (CTCG)31222729642272975Non coding
55. (TCCG)31223225782322589Coding
56. (TTAT)31223483392348350Non coding
57. (AGTT)31224081202408131Coding-Non coding
58. (AGCC)31224817702481781Coding
59. (GCTG)31226554712655482Non coding
60. (CGAT)31226796762679687Non coding
61. (TTTG)31227000612700072Coding
62. (AAGA)31227964002796411Coding
63. (GCGA)31228217132821724Coding
64. (TAGC)31229023202902331Non coding
65. (AATA)31229257792925790Coding
66. (CGAT)41629318332931848Non coding
67. (ACAA)31229560282956039Coding
68. (AGAA)31229789382978949Non coding
69. (ACAG)31230368603036871Coding
70. (AACT)31230673943067405Non coding
71. (AAGC)31230937053093716Coding
72. (CGGG)31231001573100168Coding
73. (TTAA)31231707063170717Non coding
74. (ATCG)31231838603183871Coding
75. (GCTC)31232223943222405Coding
76. (CGAT)31232506373250648Coding
77. (TAAA)31233059283305939Non coding
78. (GCAG)31233892163389227Coding
79. (TAAA)41636097703609785Coding
80. (GCAA)31236649263664937Coding
81. (GAGC)31237256533725664Coding
82. (AGGG)31237607603760771Coding
83. (CAGG)31239312853931296Coding
84. (GGTT)31240061204006131Coding
85. (CCGA)31240115574011568Coding
86. (TTTC)41640870854087100Coding
87. (GTCA)31240966044096615Coding
88. (ATAA)31241052234105234Coding
89. (CGAT)41643515104351525Non coding
90. (TATT)31243729904373001Non coding
91. (GCTG)31243766274376638Coding
92. (GCCT)31243940454394056Non coding
93. (AAGA)31244208244420835Non coding
94. (ACGA)31244933354493346Coding
95. (ATCG)31245251624525173Coding
96. (TTTA)31245717414571752Non coding
97. (ATAA)31245988034598814Non coding
98. (TAAA)31246212384621249Coding
99. (TTTA)31246887654688776Coding
100. (AAGC)31247304044730415Coding
101. (AAGC)31247436574743668Coding
102. (AAAC)31247944444794455Non coding
103. (GGTT)31248326064832617Coding
104. (GCTA)31248453764845387Coding-Non coding
105. (CCTT)31249043914904402Coding
106. (ATCG)31249429444942955Coding
107. (GCGA)31249651084965119Coding
108. (TTGA)31249784414978452Coding-Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.