CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.92 kb   Average length of SSR  : 12.35 bp
Coding      : 1488     Non-Coding           : 250   Coding and Non-Coding : 68
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AT111172011730Non coding
2. TA123131331324Coding
3. GA116238962399Coding
4. AG118451484524Coding
5. TC11116519116529Coding
6. TA13140029140041Coding
7. AG11151924151934Coding
8. TG11169922169932Coding
9. AG12176211176222Coding
10. TA12214692214703Non coding
11. TA11320577320587Coding
12. TC12333375333386Coding
13. TC11342975342985Coding
14. AT11407543407553Coding-Non coding
15. AG11409593409603Coding
16. GA16426212426227Coding
17. AT11517371517381Non coding
18. AG11530467530477Coding
19. AG14531704531717Coding
20. AG13584261584273Coding
21. AT14625243625256Coding
22. TA11630862630872Non coding
23. TA12634612634623Coding
24. AT11635003635013Coding
25. AT12665918665929Non coding
26. AG11702427702437Coding
27. AT11740109740119Coding
28. TA12746301746312Coding
29. AT11759568759578Non coding
30. TA14808367808380Non coding
31. TA13815647815659Coding
32. AT12821711821722Coding-Non coding
33. TC12830057830068Coding
34. AT14845343845356Coding
35. TA12853955853966Non coding
36. TA13876348876360Coding
37. CT12903743903754Coding
38. CT11927551927561Coding
39. GA12934802934813Non coding
40. AC11956271956281Coding
41. TA12962737962748Non coding
42. AG11965711965721Coding
43. CT1210274801027491Coding
44. TA1210715991071610Non coding
45. AT1210727011072712Coding
46. TA1210878121087823Coding
47. AT1111045251104535Non coding
48. TA1211157971115808Non coding
49. TA1111283891128399Non coding
50. AT1111301621130172Non coding
51. TA1411667281166741Coding-Non coding
52. TA1211998691199880Non coding
53. AT1212308111230822Coding
54. TA1112756771275687Non coding
55. AT1112951021295112Coding-Non coding
56. AG1113798361379846Coding
57. GA1113829701382980Coding
58. CT1113981151398125Coding
59. TC1114029371402947Coding
60. AT1114044541404464Coding
61. AT1215230401523051Coding
62. AG1215266751526686Coding
63. AT1115348561534866Coding
64. AT1215623171562328Non coding
65. AT1115725511572561Coding
66. AG1215780251578036Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.