CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.92 kb   Average length of SSR  : 12.35 bp
Coding      : 1488     Non-Coding           : 250   Coding and Non-Coding : 68
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TTTAGC1840504067Coding
2. ATTTTT182514125158Coding
3. CCAAAA18118538118555Coding
4. AAAATT19119795119813Coding
5. GAATTA19142250142268Coding
6. ATATTG18147893147910Coding
7. ATTTTA24153769153792Coding
8. CTTTAT18164261164278Coding
9. TATAAA19191266191284Coding
10. AAGCAA24199490199513Coding
11. CCAAAA18225407225424Coding
12. TTTATT18272053272070Coding
13. TGATGG18278354278371Coding
14. ATTAAA19284048284066Coding
15. CAAGAG18288402288419Coding
16. TTGCTG24333420333443Coding
17. AATTTA19355328355346Non coding
18. AACTTG19367464367482Coding
19. TATAAA17387563387579Coding
20. AAAATT18396614396631Coding
21. GAAAAA18591162591179Coding
22. TACTTT18594892594909Coding
23. TTTTTA19677270677288Non coding
24. TCAATT19705964705982Non coding
25. TTTATT18742043742060Coding
26. AATAAA19800447800465Coding
27. ATTTTT19914794914812Coding
28. TAAATT18915632915649Coding
29. TTCATT18915804915821Coding
30. AATAAA36916867916902Non coding
31. AAAAAT19917315917333Coding
32. TTTTGT36921968922003Coding
33. AAAAAT19922891922909Coding
34. CTTAAA18985919985936Coding
35. ATATCA18993436993453Coding
36. ATTTTG1810017321001749Coding
37. AAAAAT1910171951017213Coding
38. TAAAAA1910580361058054Non coding
39. TAAATA1911551301155148Coding
40. TATTTT1811763861176403Coding
41. GTTACT1812214841221501Coding
42. ACCGAT1812217001221717Coding
43. ATAAAA1912413691241387Coding
44. ATTTTA1812975751297592Non coding
45. AAATCT1813266971326714Coding
46. GAAAAA1913277171327735Coding
47. CTTTAA1913342591334277Non coding
48. CAGAAT1913687421368760Coding
49. TTATTT1913720481372066Non coding
50. TCAATT1914093541409372Coding
51. TAATTT2414254301425453Coding
52. GAAAAT1814494871449504Coding
53. CTTGAG1814550191455036Coding
54. TTAAAA1815038761503893Coding
55. TGAATA1815088591508876Coding
56. CTACAT1815388401538857Coding
57. AATCTT1916568201656838Coding-Non coding
58. TTTTTC1916604311660449Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.