CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 158     Density of SSR      : 1SSR/ 10.57 kb   Average length of SSR  : 13.1 bp
Coding      : 115     Non-Coding           : 37   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124657Non coding
2. (AAG)4125508355094Coding
3. (TTTGA)4205904059059Coding
4. (TTC)4126546065471Non coding
5. (AATT)3126678966800Coding
6. (TAA)4126924669257Coding
7. (AGA)4127103971050Coding
8. (TGA)4127789177902Coding
9. (AATT)3128299183002Coding-Non coding
10. (AATT)312103555103566Non coding
11. (ATT)412104197104208Coding
12. (ACC)412104242104253Coding
13. (TTTA)312109770109781Non coding
14. (TGT)412117275117286Coding
15. (ATTT)312139561139572Coding
16. (TTGG)312162788162799Coding
17. (ATTT)312180969180980Coding
18. (TAAT)312190756190767Non coding
19. (AAGCAA)318199490199507Coding
20. (ATAA)312200606200617Coding
21. (T)1313224482224494Non coding
22. (ATTT)312224502224513Non coding
23. (GCA)412255348255359Coding
24. (TCAC)312260001260012Coding
25. (GAAA)312260305260316Coding
26. (AATA)312261330261341Coding
27. (ATTT)312280782280793Coding
28. (AATA)416332888332903Non coding
29. (TTGA)312339453339464Non coding
30. (AATC)312353764353775Non coding
31. (TAAA)312355871355882Non coding
32. (TCA)412357912357923Coding
33. (CCA)412377296377307Coding
34. (CAG)412382601382612Coding
35. (TAAA)312389881389892Coding
36. (CAG)618397522397539Coding
37. (CAG)412424942424953Coding
38. (GA)612426212426223Coding
39. (GCA)515438480438494Coding
40. (TGGC)312458879458890Coding
41. (AAAT)312497287497298Coding
42. (TAA)412498113498124Coding
43. (TTTG)312499032499043Coding
44. (TAAA)312545878545889Coding
45. (TCTT)312551656551667Coding
46. (TAAT)312552472552483Non coding
47. (CAA)412559260559271Coding
48. (TAGT)312593639593650Coding
49. (TAA)412612777612788Non coding
50. (TTTC)312616589616600Coding
51. (ATCACC)318627015627032Coding
52. (AGG)412627931627942Coding
53. (TTCT)312679269679280Coding
54. (TAAC)312693800693811Coding
55. (ATTT)416696881696896Coding
56. (AATTA)315728944728958Coding
57. (AATT)312751680751691Non coding
58. (AATT)312751769751780Coding
59. (TCCT)312765470765481Coding
60. (TCA)412805675805686Coding
61. (TA)612808367808378Non coding
62. (GATT)312820124820135Non coding
63. (TTGCT)315836108836122Coding
64. (ATC)412837047837058Coding
65. (AAAC)312847281847292Coding
66. (AAG)412847381847392Coding
67. (TTA)412858830858841Non coding
68. (ATT)412861541861552Non coding
69. (TAAA)312862578862589Coding
70. (AATA)312865554865565Coding
71. (AGAA)312867041867052Coding
72. (TGC)412868965868976Coding
73. (ATT)412872990873001Coding
74. (TAA)412873789873800Non coding
75. (TAA)412874143874154Coding
76. (TA)612876348876359Coding
77. (GAA)515878734878748Coding
78. (CAAAT)315885715885729Coding
79. (AAAT)312891908891919Coding
80. (ATG)412893942893953Coding
81. (TAA)412895502895513Non coding
82. (AAAT)312912902912913Non coding
83. (CTA)412915719915730Coding
84. (AATAAA)424916867916890Non coding
85. (TAAT)312916896916907Non coding
86. (TTTTGT)424921974921997Coding
87. (TAAAAA)318925184925201Coding
88. (AATT)312926970926981Coding-Non coding
89. (A)1616934355934370Non coding
90. (AGT)412945779945790Non coding
91. (TAATT)420945821945840Non coding
92. (AAAG)312951391951402Coding
93. (TCTT)312966103966114Coding
94. (ATT)515971336971350Coding
95. (ATT)41210093021009313Coding
96. (GATT)31210242321024243Coding
97. (AAAT)31210263811026392Coding
98. (TCT)41210275011027512Coding
99. (CTG)51510400711040085Coding
100. (AATT)31210564571056468Coding
101. (TTAAA)31510620151062029Non coding
102. (TATT)31210678821067893Coding
103. (ATG)51510692341069248Coding
104. (TAAT)31210795121079523Coding-Non coding
105. (ATTT)31211013771101388Coding-Non coding
106. (AAAT)31211072081107219Coding
107. (ATTT)31211315721131583Coding
108. (GCAAA)31511362671136281Coding
109. (ATT)41211636041163615Coding
110. (CAGG)31211693131169324Coding
111. (TAA)41211730861173097Coding
112. (TTTTTA)31811763881176405Coding
113. (ATGA)31211845731184584Coding
114. (TTA)41211887951188806Coding
115. (AAT)41211905751190586Coding
116. (TTAT)31212007121200723Coding
117. (AAT)41212160961216107Coding
118. (AAAT)31212306631230674Coding
119. (A)121212388591238870Non coding
120. (ATTTT)31512762071276221Non coding
121. (TTTA)41612796081279623Coding-Non coding
122. (TGC)41212814161281427Coding
123. (AATT)31212853661285377Coding
124. (AATA)31212916541291665Non coding
125. (AAATTT)31813181071318124Coding
126. (AACA)31213279151327926Coding
127. (TTTTTA)31813325081332525Coding
128. (AATT)31213335651333576Coding
129. (TTTC)31213338541333865Coding
130. (AAT)41213426311342642Coding
131. (AATT)31213492531349264Non coding
132. (TCA)41213493011349312Non coding
133. (TTA)41213533431353354Coding
134. (AAAT)31213589591358970Coding-Non coding
135. (ATAA)31213598901359901Non coding
136. (TAAA)31213688761368887Non coding
137. (ATA)41214043641404375Coding
138. (ACCA)31214054091405420Coding
139. (TAATTT)31814254301425447Coding
140. (TAA)41214573351457346Non coding
141. (AAAT)31214643041464315Non coding
142. (TTTA)31214645071464518Coding
143. (AAG)41214785411478552Coding
144. (ATAAA)31514987481498762Non coding
145. (CTT)61815122761512293Coding
146. (TCATTT)31815248961524913Coding
147. (AAAATT)31815652391565256Coding
148. (TGC)41215868611586872Coding
149. (AATT)31215881351588146Coding
150. (TCT)41215939181593929Coding
151. (ATT)41215940621594073Coding
152. (ATCAA)31516027141602728Coding
153. (AGA)41216067781606789Coding
154. (TCT)51516221641622178Coding
155. (AAAT)31216395991639610Coding
156. (AGA)41216585221658533Coding
157. (ATGTAA)31816612391661256Coding
158. (CTG)51516689341668948Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.