CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.92 kb   Average length of SSR  : 12.35 bp
Coding      : 1488     Non-Coding           : 250   Coding and Non-Coding : 68
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TTTCT141018610199Coding
2. AAAAT141275812771Coding
3. CTTCT145824058253Coding
4. TGATT205904259061Coding
5. AGAAA147153171544Coding
6. TTTGA148793387946Coding
7. TTAAA149836398376Coding
8. TTTAA15118488118502Coding-Non coding
9. TTTAT14119876119889Coding
10. AATTT16136150136165Coding
11. ATTAA14158281158294Non coding
12. TTATT14168044168057Coding
13. GCATT14191760191773Coding
14. TATTT14208280208293Coding
15. ACATA14224409224422Non coding
16. ATTTT15233948233962Coding-Non coding
17. AATTT14268202268215Coding
18. CTTTT15286963286977Coding
19. CAGTT14319987320000Coding
20. TTATT14329534329547Coding
21. TTTGG14358372358385Non coding
22. TTTAA14359701359714Non coding
23. TTTAA15363545363559Non coding
24. AAATT16372175372190Coding
25. TAAGA14393228393241Coding
26. ATTAA15401820401834Non coding
27. TAAAA14428652428665Coding
28. TTAAA15432878432892Non coding
29. TAAAA14459177459190Coding
30. AATTC14476441476454Coding
31. AGAAA14498860498873Coding
32. AATCT14538009538022Coding
33. ATTTA15542702542716Coding
34. TTTTG15620761620775Non coding
35. GATTG15625362625376Coding
36. GATTT14625460625473Coding
37. AAAAT19645375645393Coding
38. TAATT15646975646989Coding
39. AAAAG15653947653961Coding
40. TTTAT14677212677225Non coding
41. TGAAA14697185697198Coding
42. GAAAA19709194709212Coding
43. TTAAT19750342750360Coding-Non coding
44. TAAAA16754326754341Non coding
45. TAAAT15756396756410Non coding
46. TTAAA15758992759006Non coding
47. TTTAA15789274789288Coding
48. AAAAT14797926797939Coding
49. TTTTA14805816805829Non coding
50. ATTTT14814633814646Coding
51. CAATT14828321828334Coding
52. AAATT14830233830246Non coding
53. AATAA15860399860413Non coding
54. ATAAA14871597871610Non coding
55. AGAAA14880366880379Coding
56. CAAAT20885715885734Coding
57. AATAT14889695889708Coding
58. GAGAA15890860890874Coding
59. TTAAA14892762892775Coding
60. TAAAA14894240894253Coding
61. TTAGG14912806912819Coding
62. AAGAA14920579920592Coding
63. TAGAA14932301932314Coding
64. TTTTA14937062937075Non coding
65. TAATT25945821945845Non coding
66. ATTAA14946328946341Coding
67. AATTG14948990949003Coding
68. AAATC14958664958677Coding
69. TTAAA14961736961749Coding
70. TGAAT14986968986981Coding
71. AATTT15991185991199Coding
72. AATAC1410266331026646Coding
73. TTTAA1510275991027613Coding
74. ATTTT1610354621035477Coding
75. TATTT1410556031055616Coding
76. ATTGC1410574151057428Coding
77. TAAAT2110620101062030Non coding
78. AAATT1511223661122380Coding
79. TTAAA1611549031154918Coding-Non coding
80. TAAAA1411683691168382Non coding
81. CATAG1411840511184064Coding
82. CTTTT2012091291209148Coding
83. ACTTT1612488201248835Coding
84. GAAAA1512513331251347Coding
85. AAAGA1512765851276599Coding
86. CTTTT1413006591300672Coding
87. TGATC1913290191329037Coding
88. AAAAT1413493231349336Coding
89. GTATC1413619531361966Coding
90. AGAAT1413659331365946Non coding
91. TAATA1413681311368144Coding
92. TAAAT1513778001377814Non coding
93. TTTTC1413883921388405Coding
94. CTTTC1514856931485707Coding
95. ATAAA2614987481498773Non coding
96. AAAAT1415557441555757Non coding
97. ATAAC1415636191563632Coding-Non coding
98. CCAAT1415756041575617Coding
99. TTAAT1415880531588066Coding
100. AAAAT1416380961638109Coding-Non coding
101. TCAAA1416416851641698Coding
102. ATTTT1416444591644472Non coding
103. CATTA1416674281667441Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.