CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 0.92 kb   Average length of SSR  : 12.35 bp
Coding      : 1488     Non-Coding           : 250   Coding and Non-Coding : 68
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AAT1315181530Coding
2. GAA1219211932Coding
3. AAT1278247835Coding
4. ATA1191669176Coding
5. GCT121253912550Coding
6. ATT121280812819Coding
7. CAT122288622897Coding
8. AAT122955729568Coding
9. ATT123099831009Non coding
10. TGC113126031270Coding
11. ATT133410634118Coding
12. TAG134140341415Coding
13. ATG124815648167Coding
14. GGA154874648760Coding
15. AAT125254852559Non coding
16. TAA135467154683Non coding
17. AGA125508455095Coding
18. GCA125520255213Coding
19. ATT125746757478Coding
20. TGT126247562486Coding
21. CTT126544765458Non coding
22. TCT156545865472Non coding
23. GAA116631966329Coding
24. ATA116833768347Coding
25. ATT116919269202Coding
26. TAA156924369257Coding
27. AGA147103971052Coding
28. GTT127450574516Coding
29. TGC127725877269Coding
30. TGA157789177905Coding
31. AGA127962479635Coding
32. TGG129253692547Coding
33. AGA119530995319Coding
34. ATT12101443101454Coding
35. ATT15104194104208Coding
36. ACC15104242104256Coding
37. ATC12113067113078Coding
38. TAA12113324113335Coding
39. ATT11118908118918Coding
40. AAT13122657122669Coding
41. TAA12127490127501Non coding
42. CAG11129301129311Coding
43. TGA11129581129591Coding
44. ATT12129796129807Coding
45. ATA12132840132851Non coding
46. ATT12137219137230Coding
47. TAT15137314137328Coding
48. ATA11139848139858Non coding
49. ATT13140523140535Coding
50. CTT13140585140597Coding
51. AAG12149168149179Coding
52. TAA12159202159213Non coding
53. CAG12160816160827Coding
54. GAA12161386161397Coding
55. CTG12163369163380Coding
56. GCT11165555165565Coding
57. AGC12165878165889Coding
58. TTA12168776168787Coding
59. ATA12168825168836Coding
60. TAA13176263176275Coding
61. ATT12177455177466Coding-Non coding
62. AAG12183813183824Coding
63. TAT12187367187378Coding
64. ATT12193217193228Coding
65. AAT11201730201740Coding
66. CTT12203681203692Coding
67. AGG12207121207132Coding
68. GTT13208027208039Coding
69. TAG12208141208152Coding
70. TCT11209416209426Coding
71. AGC11213232213242Coding
72. AAG12216390216401Coding
73. CTT11217084217094Coding
74. ATT12218268218279Coding
75. TAT13219494219506Coding
76. GTT11221683221693Coding
77. GAT12223700223711Coding
78. TAC12225798225809Coding
79. CAG11226836226846Coding
80. AAG12227548227559Coding
81. GCT12228418228429Coding
82. TTA13229764229776Coding-Non coding
83. CAA12229945229956Coding
84. CTT12230158230169Coding
85. TAA11231680231690Non coding
86. ATT14239456239469Non coding
87. ACT12240976240987Coding
88. TTG11242439242449Coding
89. TTG12243702243713Coding
90. GCT11244247244257Coding
91. CAT12247780247791Coding
92. GAT15252404252418Coding
93. AGT12258587258598Coding
94. TAA12261352261363Coding
95. GCA12263558263569Coding
96. TTC11265175265185Coding
97. TCT12268576268587Coding
98. ATA12274595274606Non coding
99. TAT12276663276674Coding
100. GGA11278601278611Coding
101. CTT12279716279727Coding
102. TTA12280967280978Coding
103. GAT11288297288307Coding
104. AGA12297737297748Coding
105. TAA11298070298080Coding
106. TTC13301642301654Coding
107. TCA11302190302200Coding
108. GTT13303289303301Coding
109. TTG11303321303331Coding
110. ATT19303429303447Coding
111. AAT12306641306652Coding
112. CTT11310733310743Coding
113. GAA12312988312999Coding
114. TAT12314894314905Non coding
115. CAA12315360315371Coding
116. CTT12318470318481Coding
117. TAT12324506324517Non coding
118. ATT12328642328653Coding
119. ATT12336799336810Non coding
120. TTA11339647339657Coding
121. TTA12340599340610Coding-Non coding
122. TAT12340795340806Non coding
123. TTA13344603344615Coding
124. ATA11344913344923Coding
125. TAA12345494345505Coding
126. AGG12348462348473Coding<