CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 158     Density of SSR      : 1SSR/ 10.57 kb   Average length of SSR  : 13.1 bp
Coding      : 115     Non-Coding           : 37   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124657Non coding
2. (AAG)4125508355094Coding
3. (TTC)4126546065471Non coding
4. (TAA)4126924669257Coding
5. (AGA)4127103971050Coding
6. (TGA)4127789177902Coding
7. (ATT)412104197104208Coding
8. (ACC)412104242104253Coding
9. (TGT)412117275117286Coding
10. (GCA)412255348255359Coding
11. (TCA)412357912357923Coding
12. (CCA)412377296377307Coding
13. (CAG)412382601382612Coding
14. (CAG)618397522397539Coding
15. (CAG)412424942424953Coding
16. (GCA)515438480438494Coding
17. (TAA)412498113498124Coding
18. (CAA)412559260559271Coding
19. (TAA)412612777612788Non coding
20. (AGG)412627931627942Coding
21. (TCA)412805675805686Coding
22. (ATC)412837047837058Coding
23. (AAG)412847381847392Coding
24. (TTA)412858830858841Non coding
25. (ATT)412861541861552Non coding
26. (TGC)412868965868976Coding
27. (ATT)412872990873001Coding
28. (TAA)412873789873800Non coding
29. (TAA)412874143874154Coding
30. (GAA)515878734878748Coding
31. (ATG)412893942893953Coding
32. (TAA)412895502895513Non coding
33. (CTA)412915719915730Coding
34. (AGT)412945779945790Non coding
35. (ATT)515971336971350Coding
36. (ATT)41210093021009313Coding
37. (TCT)41210275011027512Coding
38. (CTG)51510400711040085Coding
39. (ATG)51510692341069248Coding
40. (ATT)41211636041163615Coding
41. (TAA)41211730861173097Coding
42. (TTA)41211887951188806Coding
43. (AAT)41211905751190586Coding
44. (AAT)41212160961216107Coding
45. (TGC)41212814161281427Coding
46. (AAT)41213426311342642Coding
47. (TCA)41213493011349312Non coding
48. (TTA)41213533431353354Coding
49. (ATA)41214043641404375Coding
50. (TAA)41214573351457346Non coding
51. (AAG)41214785411478552Coding
52. (CTT)61815122761512293Coding
53. (TGC)41215868611586872Coding
54. (TCT)41215939181593929Coding
55. (ATT)41215940621594073Coding
56. (AGA)41216067781606789Coding
57. (TCT)51516221641622178Coding
58. (AGA)41216585221658533Coding
59. (CTG)51516689341668948Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.