CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. AS9601 (NC_008816 1669887 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 158     Density of SSR      : 1SSR/ 10.57 kb   Average length of SSR  : 13.1 bp
Coding      : 115     Non-Coding           : 37   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 3 3 59 71 10 12 158
IMPERFECT 18 66 687 874 103 58 1806
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATT)3126678966800Coding
2. (AATT)3128299183002Coding-Non coding
3. (AATT)312103555103566Non coding
4. (TTTA)312109770109781Non coding
5. (ATTT)312139561139572Coding
6. (TTGG)312162788162799Coding
7. (ATTT)312180969180980Coding
8. (TAAT)312190756190767Non coding
9. (ATAA)312200606200617Coding
10. (ATTT)312224502224513Non coding
11. (TCAC)312260001260012Coding
12. (GAAA)312260305260316Coding
13. (AATA)312261330261341Coding
14. (ATTT)312280782280793Coding
15. (AATA)416332888332903Non coding
16. (TTGA)312339453339464Non coding
17. (AATC)312353764353775Non coding
18. (TAAA)312355871355882Non coding
19. (TAAA)312389881389892Coding
20. (TGGC)312458879458890Coding
21. (AAAT)312497287497298Coding
22. (TTTG)312499032499043Coding
23. (TAAA)312545878545889Coding
24. (TCTT)312551656551667Coding
25. (TAAT)312552472552483Non coding
26. (TAGT)312593639593650Coding
27. (TTTC)312616589616600Coding
28. (TTCT)312679269679280Coding
29. (TAAC)312693800693811Coding
30. (ATTT)416696881696896Coding
31. (AATT)312751680751691Non coding
32. (AATT)312751769751780Coding
33. (TCCT)312765470765481Coding
34. (GATT)312820124820135Non coding
35. (AAAC)312847281847292Coding
36. (TAAA)312862578862589Coding
37. (AATA)312865554865565Coding
38. (AGAA)312867041867052Coding
39. (AAAT)312891908891919Coding
40. (AAAT)312912902912913Non coding
41. (TAAT)312916896916907Non coding
42. (AATT)312926970926981Coding-Non coding
43. (AAAG)312951391951402Coding
44. (TCTT)312966103966114Coding
45. (GATT)31210242321024243Coding
46. (AAAT)31210263811026392Coding
47. (AATT)31210564571056468Coding
48. (TATT)31210678821067893Coding
49. (TAAT)31210795121079523Coding-Non coding
50. (ATTT)31211013771101388Coding-Non coding
51. (AAAT)31211072081107219Coding
52. (ATTT)31211315721131583Coding
53. (CAGG)31211693131169324Coding
54. (ATGA)31211845731184584Coding
55. (TTAT)31212007121200723Coding
56. (AAAT)31212306631230674Coding
57. (TTTA)41612796081279623Coding-Non coding
58. (AATT)31212853661285377Coding
59. (AATA)31212916541291665Non coding
60. (AACA)31213279151327926Coding
61. (AATT)31213335651333576Coding
62. (TTTC)31213338541333865Coding
63. (AATT)31213492531349264Non coding
64. (AAAT)31213589591358970Coding-Non coding
65. (ATAA)31213598901359901Non coding
66. (TAAA)31213688761368887Non coding
67. (ACCA)31214054091405420Coding
68. (AAAT)31214643041464315Non coding
69. (TTTA)31214645071464518Coding
70. (AATT)31215881351588146Coding
71. (AAAT)31216395991639610Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.