CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.34 kb   Average length of SSR  : 12.32 bp
Coding      : 1081     Non-Coding           : 136   Coding and Non-Coding : 41
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AG121543515446Coding
2. AT116432364333Coding
3. GA117104471054Coding
4. AG118881088820Coding
5. AT11120687120697Coding
6. AG14230617230630Coding
7. TA12235887235898Coding
8. AG11244804244814Coding
9. AG11291019291029Coding
10. AT12321730321741Coding
11. CT11338340338350Coding
12. AG11359082359092Coding
13. AT12388643388654Coding
14. GA15393628393642Coding
15. TA11417721417731Coding
16. TA12493373493384Coding-Non coding
17. TA12511308511319Non coding
18. TC11514124514134Coding
19. GA11530757530767Coding
20. CT11559152559162Coding
21. TA12579403579414Non coding
22. TA11647419647429Coding
23. TC11649146649156Non coding
24. TA11671400671410Coding
25. AT13672636672648Coding
26. AG12703285703296Coding
27. TC11703453703463Coding
28. TC13724129724141Coding
29. TC13765086765098Coding
30. AG11768782768792Coding
31. CT14835529835542Coding
32. TA11842647842657Coding
33. TA12845380845391Coding
34. TA12857508857519Coding
35. CT11896686896696Coding
36. AG11959825959835Coding
37. AT1110520271052037Coding-Non coding
38. AT1210548731054884Coding
39. TA1111194501119460Coding
40. AG1111406711140681Coding
41. AG1111435651143575Coding
42. AT1111473581147368Non coding
43. AG1111663461166356Coding
44. CT1112125701212580Coding
45. CT1112365061236516Coding
46. TA1112390831239093Coding
47. AT1112939151293925Non coding
48. AT1213121511312162Non coding
49. TA1213243261324337Coding
50. TC1113268821326892Non coding
51. GA1113677681367778Non coding
52. AT1113694561369466Coding
53. GA1213826621382673Coding
54. AG1114165461416556Coding
55. AG1114607201460730Coding
56. CT1114965201496530Coding
57. TA1315408971540909Coding
58. AG1215437621543773Coding
59. TC1115671441567154Coding
60. TC1215827301582741Coding
61. AT1216021081602119Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.