CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.34 kb   Average length of SSR  : 12.32 bp
Coding      : 1081     Non-Coding           : 136   Coding and Non-Coding : 41
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AATTAA191227912297Coding
2. GTGATG189165791674Coding
3. CTAGTG19129940129958Coding
4. TTCTCC18204112204129Coding
5. GCTTGA19280541280559Coding
6. TGAAGA18298654298671Coding
7. AATTAT18320691320708Coding
8. TAATTA18352809352826Coding
9. ACTATG18373952373969Coding
10. ATTGCT18405912405929Coding
11. GATACA18522257522274Coding
12. TATAGA18643643643660Non coding
13. GCCTCA24658880658903Coding
14. GACCAT60663067663126Coding
15. ATCTTT18752868752885Coding
16. CATCAA18839184839201Coding
17. TTTTTA18860441860458Coding
18. CCATTA18863227863244Coding
19. TTTTTA19955874955892Coding
20. ATCTGA4210327961032837Coding
21. AACAAA1910769291076947Coding-Non coding
22. TCAAAA1911845221184540Coding
23. TCTGCA2311996561199678Coding
24. CATGAG7113153131315383Coding
25. TGCCTT1814914381491455Coding
26. ACCTAC1814964131496430Coding
27. GCTGTT1814966071496624Coding
28. TTTCCC1814989481498965Coding
29. AGCACT1815022781502295Coding
30. AGCAAC2416691011669124Coding
31. AGAAAA1916872891687307Coding
32. AAAGGT1816885141688531Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.