CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 96     Density of SSR      : 1SSR/ 17.59 kb   Average length of SSR  : 14.39 bp
Coding      : 73     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)4126576Non coding
2. (ATGG)3121183811849Coding
3. (GGT)4121666016671Coding
4. (GGC)4121669016701Coding
5. (GGC)4121690616917Coding
6. (GCA)4123450634517Non coding
7. (GGA)5155572855742Coding
8. (GAG)4127775377764Coding
9. (GAAA)3129386793878Coding
10. (CATT)312183650183661Coding
11. (TCTT)312221125221136Coding
12. (GCAA)312227941227952Coding
13. (TTTA)312231413231424Non coding
14. (TAC)412240600240611Coding
15. (ATTT)312283461283472Non coding
16. (GTGAA)630299586299615Coding-Non coding
17. (AAT)412300748300759Coding
18. (GTGA)312304492304503Non coding
19. (CTTT)312321291321302Coding
20. (TTC)618337628337645Coding
21. (GATA)520358892358911Non coding
22. (ACT)412368739368750Coding
23. (GA)612393628393639Coding
24. (TGC)412407403407414Coding
25. (TCCACC)318436288436305Coding
26. (ATTT)312444790444801Coding
27. (AAGA)520454314454333Non coding
28. (TTG)412467453467464Coding
29. (TTAA)416502905502920Non coding
30. (TTTG)312506362506373Coding
31. (TCT)412512235512246Coding
32. (GCT)412515705515716Coding
33. (GAAG)312552416552427Non coding
34. (CCAA)312594415594426Coding
35. (TTG)412607357607368Coding
36. (TAA)412655622655633Coding
37. (GCT)1030658784658813Coding
38. (GCT)412658847658858Coding
39. (GCCTCA)318658880658897Coding
40. (GACCAT)848663067663114Coding
41. (GAAT)312663734663745Coding
42. (TTATT)315670435670449Non coding
43. (TTC)412681385681396Coding
44. (TTCT)312702871702882Coding
45. (GCCA)312710972710983Coding
46. (TGA)412711777711788Non coding
47. (CAG)412716825716836Coding
48. (TTC)412726013726024Coding
49. (TATT)312766655766666Coding
50. (AATT)312780510780521Coding
51. (AGA)412795619795630Coding
52. (AATT)312804828804839Non coding
53. (GAA)412830791830802Coding
54. (CT)612835529835540Coding
55. (AGA)412864135864146Coding
56. (TTTA)312872068872079Non coding
57. (GGA)412915105915116Coding
58. (GGC)721999454999474Coding
59. (ATCTGA)63610327961032831Coding
60. (AAAG)31210475801047591Coding
61. (TCC)41210569801056991Coding
62. (A)171710600501060066Non coding
63. (TCC)41210768261076837Coding
64. (TCTTT)31510898121089826Coding
65. (CTG)51510988971098911Coding
66. (GGA)41211102821110293Coding
67. (CAAG)31211911921191203Coding
68. (ATTA)31211926961192707Coding-Non coding
69. (AAGA)31211964461196457Coding
70. (AAAG)31212404981240509Coding
71. (GCT)41212722481272259Coding
72. (AGAC)31212730431273054Non coding
73. (TTTC)31212756471275658Coding
74. (TAAA)31212887031288714Coding
75. (TAAA)31212982441298255Non coding
76. (GAAA)31213006931300704Non coding
77. (AGA)41213062351306246Coding
78. (AGA)41213062921306303Coding
79. (TAAT)31213073581307369Non coding
80. (CATGAG)106013153181315377Coding
81. (TCTA)31213213671321378Non coding
82. (GATA)31213679691367980Non coding
83. (ATTT)31213936181393629Coding
84. (ATC)41214346871434698Coding
85. (AGA)41214464141446425Coding
86. (TAAT)31214858191485830Non coding
87. (AAC)41214899461489957Coding
88. (CAA)41214964481496459Coding
89. (TGC)41215440621544073Coding
90. (CAAG)31215724221572433Coding
91. (AAG)51515775321577546Coding
92. (AAAGC)31516011831601197Coding
93. (AAAGA)31516452031645217Coding
94. (AGCAAC)31816691011669118Coding
95. (TCAA)31216708071670818Coding
96. (AAAAAG)31816872921687309Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.