CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.34 kb   Average length of SSR  : 12.32 bp
Coding      : 1081     Non-Coding           : 136   Coding and Non-Coding : 41
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TGAAA15140154Non coding
2. TTGCC142365323666Coding
3. GAACT152670526719Coding
4. GTCAA147753477547Coding
5. ACAAA14117581117594Coding
6. CAATC14179882179895Coding
7. ATTAG14180188180201Coding
8. TTGGT14201816201829Coding
9. GTATT14224694224707Coding-Non coding
10. TTATT14271832271845Coding
11. GTGAA35299586299620Coding-Non coding
12. AATTG14312106312119Coding
13. TTTTC15323665323679Coding
14. CTGAT14339696339709Coding
15. ACTTT14354494354507Non coding
16. TAATT14452709452722Coding-Non coding
17. GAAAA15468349468363Coding
18. TGGAG14520725520738Coding
19. CTAAT14673094673107Coding
20. ATTCT16685544685559Coding
21. TTACT16691769691784Coding
22. TTTTC15744210744224Coding
23. AATCT14759898759911Coding
24. ATTCA16766011766026Coding
25. AGGTC14766286766299Coding
26. AACCT14773254773267Coding
27. ATAAT14811010811023Coding
28. GAACA14818338818351Coding
29. AATTT14847610847623Coding
30. TGGAA15848867848881Coding
31. AAAAC14918486918499Non coding
32. TCGGA14923640923653Coding
33. AAGCC15941113941127Coding
34. AAGAA15962905962919Coding
35. AAAAG15976698976712Coding
36. AAAAG1510272231027237Coding
37. AATTC1410281221028135Coding
38. TAAAA1410807181080731Coding
39. TTTTA2111865631186583Non coding
40. TCAAA1511883881188402Coding
41. AATTG1412219731221986Coding
42. TCACA1512427561242770Coding
43. GTTTT1512940091294023Coding-Non coding
44. TTTTC1512960141296028Coding
45. TTCTT2013035141303533Coding
46. TTTAT1413051601305173Non coding
47. ATTTC1513230641323078Coding-Non coding
48. CAAAC1513909421390956Non coding
49. AGCTA1414005241400537Coding
50. AAGAA1515132231513237Coding
51. TTAAA1515316991531713Non coding
52. TGCAA1516090401609054Coding
53. CGAAT1416352181635231Coding
54. GAATT1416506041650617Coding
55. CCAAC1516694711669485Coding
56. ATTTT1516833951683409Coding
57. TTCCA1416846401684653Coding
58. CAAAT1516868441686858Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.