CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.34 kb   Average length of SSR  : 12.32 bp
Coding      : 1081     Non-Coding           : 136   Coding and Non-Coding : 41
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CTA146376Non coding
2. ATG1131543164Coding
3. CAT1240274038Coding
4. TCA1261326143Coding
5. TTA1263856396Coding
6. AGA121213612147Coding
7. TCT121349913510Coding
8. GGT151665716671Coding
9. GGT121671716728Coding
10. GGT121680716818Coding
11. GGT121685816869Coding
12. GGT121688216893Coding
13. GGT121693616947Coding
14. AAG111841718427Coding
15. AAT132076720779Coding-Non coding
16. ATT122440124412Coding
17. CTA122870028711Coding
18. TAT123212432135Coding
19. TGC124052940540Coding
20. TGT114435244362Coding
21. TAT124582345834Coding
22. TAG124875348764Coding
23. TCT124959649607Coding
24. CTG125197851989Coding
25. GGA185572855745Coding
26. CTT125871858729Coding
27. CTT155939559409Coding
28. GCA126274562756Coding
29. ATA126320163212Coding
30. GAG126393163942Coding
31. TCT126480564816Coding
32. AGA126623966250Coding
33. AGA137145171463Coding
34. GTC127201772028Coding
35. TTG127510275113Coding
36. TCT117807878088Coding
37. AAT128417184182Coding
38. AGA118540785417Coding
39. TGC128753687547Coding
40. CTA129006590076Coding
41. TGG129099591006Coding
42. ACT12100098100109Coding
43. AGA12108167108178Coding
44. GAT11112236112246Coding
45. TAA12114592114603Non coding
46. AAT12122208122219Coding
47. GAA13125892125904Coding
48. GAA12132463132474Coding
49. TGA11152758152768Coding
50. AGA12153270153281Coding
51. TGC12153471153482Coding
52. ATC11154341154351Coding
53. AGA12156483156494Coding
54. CTT12161569161580Coding
55. GCC12181722181733Coding
56. TTC12184789184800Coding
57. GAT11189781189791Coding
58. ACC11190681190691Coding
59. GCA12191777191788Coding
60. CTT11195433195443Coding
61. CTT12196416196427Coding
62. TAG12202480202491Coding
63. ATT12205128205139Non coding
64. CGT12210107210118Coding
65. CAC12211610211621Coding
66. TTC12212985212996Coding
67. GTG12231507231518Coding
68. CTT12240847240858Coding
69. TCA12242220242231Coding
70. TGC12243938243949Coding
71. GTT12247631247642Coding
72. TGA12251618251629Coding
73. TAT12257270257281Coding
74. TCT11263542263552Coding
75. AGC12266112266123Coding
76. TTG11273545273555Coding
77. TGA11278581278591Coding
78. TAG12279479279490Coding
79. CCA11283948283958Coding
80. AGA12285892285903Coding
81. TAT12287986287997Coding
82. CTG13289651289663Coding
83. CAT12291294291305Coding
84. CTT15292320292334Coding
85. AAT13297808297820Coding
86. CCT12298604298615Coding
87. ATA12300749300760Coding
88. TCT11308972308982Coding
89. GTG12310556310567Coding
90. TCT16311772311787Coding
91. AGC12311946311957Coding
92. ATA11315690315700Coding
93. ATA15317810317824Coding
94. ATA12318362318373Coding
95. CAA12327703327714Coding
96. TCA11335172335182Coding
97. TTC12340514340525Coding
98. CTT11350303350313Coding
99. TAT13352353352365Coding
100. ATT12352456352467Coding
101. GAA12355748355759Coding
102. GGA11358694358704Non coding
103. CAA12359359359370Non coding
104. AGA11371537371547Coding
105. TAC12381064381075Coding
106. AGC12381928381939Coding
107. CTA12384381384392Coding
108. TAG12386560386571Coding
109. TGC12396193396204Coding
110. GCA12400087400098Coding
111. CAC12401670401681Coding
112. CTT12404379404390Coding
113. ACA12404524404535Coding
114. ATG12404826404837Coding
115. TGC15407403407417Coding
116. GCT12421404421415Coding
117. GCT12421707421718Coding
118. CAA11424212424222Coding
119. AGA12426734426745Coding
120. AAG13431739431751Coding
121. CTT13434963434975Coding
122. CAG12437271437282Coding
123. TTC12439205439216Coding
124. TCA12445575445586Coding
125. TAA12449120449131Non coding
126. GAA12450478450489Coding
127. AGA12451157451168Coding
128. ATA12461174461185Non coding
129. AAG11462953462963Coding
130. TCT11465129465139Coding
131. TCT11465229465239Coding
132. GAG12466979466990Coding
133. GAT12478813478824Coding
134. AGT12478902478913Coding
135. TTG12485558485569Coding
136. TTG15488423488437Coding
137. TAA12489334489345Coding
138. TCC12490034490045Coding
139. ACC15491913491927Coding
140. CTG12497271497282Coding
141. CTT13498952498964Coding
142. TCT12499951499962Coding
143. CTT12510516510527Coding
144. TCT15512235512249Coding
145. CAG12512434512445Coding
146. CAA12514218514229Coding
147. TGT12515629515640Coding
148. GCT15515702515716Coding
149. TGC12517200517211Coding
150. AGA11518471518481Coding-Non coding
151. CTG12519623519634Coding
152. ATG12525739525750Coding
153. GTG12531109531120Coding
154. ATT12532697532708Coding
155. GTT12535176535187Coding
156. TGT12536715536726Coding
157. AAG11538423538433Coding
158. TCT13544296544308Coding
159. ATG11544374544384Coding
160. TCT11551591551601Coding
161. AAG15552629552643Coding
162. CTA11555723555733Non coding
163. ATT12560845560856Non coding
164. GTT12566779566790Coding
165. AGA11567920567930Coding
166. TGC12568370568381Coding
167. CTG12569932569943Coding
168. GTC15573090573104Non coding
169. TAA12576257576268Non coding
170. TCT11577147577157Coding
171. CTT12579998580009Coding
172. GAG12580994581005Coding
173. TGT11582246582256Non coding
174. TAA12586487586498Coding
175. GTG12590219590230Coding
176. TCT12599553599564Coding
177. ATT11600610600620Non coding
178. ATT12601227601238Non coding
179. GCA12602718602729Coding
180. TGT12607358607369Coding
181. AGA11608262608272Coding
182. GCT11613552613562Coding
183. TCT12613987613998Coding
184. ATT11617834617844Coding
185. TCA12619169619180Coding
186. CTT11622668622678Coding
187. AGG12623068623079Non coding
188. ATA12628917628928Coding
189. ATT15632592632606Non coding
190. CTT12633999634010Non coding
191. CCT12634503634514Coding
192. AAT12638869638880Coding
193. GTT12639537639548Coding
194. TCA11650483650493Coding
195. TAA15655622655636Coding
196. TGT12656422656433Coding
197. CAT12662989663000Coding
198. CTA12663970663981Coding
199. ATC12664439664450Coding
200. TAT12664627664638Coding
201. ACA11670840670850Coding
202. CTA11674661674671Coding
203. TCT12682851682862Coding
204. CAG12688038688049Coding
205. TAA12689966689977Coding
206. AAT11690069690079Coding
207. TCA13693018693030Coding
208. TCT11693151693161Coding
209. TTA12696089696100Coding
210. ATA11697212697222Coding
211. AGA11701869701879Coding
212. GCT12705990706001Coding
213. AAT11711486711496Non coding
214. ATA13712949712961Coding
215. TTA12715724715735Non coding
216. TAA12716394716405Coding
217. TAT13718468718480Coding
218. TGA11719301719311Coding
219. ATC12721753721764Coding
220. TTC12725026725037Coding
221. ATT13725101725113Coding
222. ATC12726049726060Coding
223. CTT11726613726623Coding
224. ATT11729549729559Coding
225. CCA11730505730515Coding
226. CAT12730587730598Coding
227. AGC12731449731460Coding
228. AGT12733132733143Coding
229. CTT12734063734074Coding
230. TAA11736504736514Non coding
231. TCT14738810738823Coding
232. AAT12739061739072Coding
233. CCA12745479745490Coding
234. CAA12745804745815Coding
235. ATT11755495755505Non coding
236. ATA12761580761591Non coding
237. TGA12761648761659Coding
238. ATT12766214766225Coding
239. TTC11767229767239Coding
240. TAT12774238774249Coding
241. AGG12776965776976Coding
242. ATA11778517778527Non coding
243. CAT12791309791320Coding
244. AGT11792488792498Coding
245. ATT13795008795020Non coding
246. AGA15795619795633Coding
247. TTA11799248799258Non coding
248. TAT12802828802839Coding
249. CTG12803399803410Coding
250. AAT12807128807139Coding
251. TCT11818319818329Coding
252. TTA12819874819885Coding
253. AAT12822116822127Coding
254. AGA11825150825160Coding
255. ATT12827650827661Coding
256. TGA12829709829720Coding
257. GAA11833711833721Coding
258. TAA12834371834382Coding-Non coding
259. TGA11839744839754Coding
260. ATT12840734840745Coding
261. TAT11842804842814Coding
262. TTA11843109843119Coding
263. TTA12846998847009Coding
264. TCA12847637847648Coding
265. ATT12850519850530Coding
266. TTA11856467856477Coding
267. GCA12863633863644Coding
268. AGA15864135864149Coding
269. ATT12864329864340Coding
270. CAA12867067867078Coding
271. AAT12868108868119Non coding
272. AGA11869193869203Coding
273. TAA12870273870284Coding
274. ATT12874965874976Coding
275. ACA11876168876178Coding
276. ACA12882297882308Coding
277. TCT12882345882356Coding
278. TTC13883968883980Coding
279. TAA12887190887201Coding
280. TAA12889873889884Coding-Non coding
281. CTT11890302890312Coding
282. CAA13900365900377Coding
283. CAT12904035904046Coding
284. AAC15904162904176Coding
285. TGG12912718912729Coding
286. ATT12913701913712Coding
287. ACA12914047914058Coding
288. AGA12919103919114Coding
289. TAA12920202920213Coding
290. GAG11921076921086Coding
291. ATC11922730922740Coding
292. CAT12924552924563Coding
293. ATC12927665927676Coding
294. TTG12928222928233Coding
295. TTG12929579929590Coding
296. AAC12933849933860Coding
297. AAC12934713934724Coding
298. TAA12938982938993Coding
299. CAG12941827941838Coding
300. TCT11943418943428Coding
301. CTG12943829943840Coding
302. TTC15945340945354Coding
303. AAT13947931947943Coding
304. ACA12948409948420Coding
305. ATA11948700948710Coding
306. GAA12949252949263Coding
307. CCA12950549950560Coding
308. ACA12954894954905Coding
309. CTT11957383957393Coding
310. ACT13957509957521Non coding
311. TTA11959249959259Coding
312. ATA11961888961898Coding
313. AAG12962601962612Coding
314. GCT11962774962784Coding
315. CTC12963691963702Coding
316. GCA11969997970007Coding
317. AGT12970174970185Coding
318. AGA11970697970707Coding
319. GCA12971418971429Coding
320. CCT12972973972984Coding
321. CTG12973496973507Coding
322. GCT12974451974462Coding
323. AAG13975865975877Coding-Non coding
324. GAA13977657977669Coding
325. CTA12996138996149Coding
326. ATA11998884998894Non coding
327. TTG12999221999232Coding
328. AGA13999279999291Coding
329. GCT12999871999882Coding
330. TAA1210010631001074Coding
331. TAT1310026881002700Coding
332. AAT1210055981005609Coding
333. TTA1110060031006013Coding
334. ATT1210104981010509Coding
335. CTT1210132841013295Coding
336. ACA1110164471016457Non coding
337. TGG1210186531018664Coding
338. CAA1210218141021825Coding
339. GAA1110244061024416Coding
340. CAA1210280091028020Coding
341. ATC1210331651033176Coding
342. AGA1210333191033330Coding
343. AGC1110367431036753Coding
344. GAA1210414371041448Coding
345. TAT1110424631042473Non coding
346. AAT1210429361042947Coding
347. CAG1310494051049417Coding
348. TAT1310506251050637Coding
349. TTA1110529141052924Coding
350. ATC1210559001055911Coding
351. GAA1310563161056328Coding
352. TCC1210590171059028Coding
353. CTG1210604481060459Coding
354. CAA1210626051062616Coding
355. TAT1110641601064170Coding
356. TGA1210645591064570Non coding
357. AGA1210685261068537Non coding
358. GAA1210719081071919Coding
359. CTC1110736111073621Non coding
360. TCC1510768261076840Coding
361. CAT1210789911079002Coding
362. CAT1210804891080500Coding
363. CCT1210805221080533Coding
364. ATA1210807631080774Coding
365. ATT1110880351088045Coding
366. GAA1210902431090254Coding
367. AAC1110988861098896Coding
368. CTG1810988971098914Coding
369. GAA1111016171101627Coding
370. CCT1211038111103822Coding
371. AAG1111093401109350Coding
372. GAG1211102831110294Coding
373. AAT1311128511112863Coding
374. ATA1211148781114889Coding
375. TAG1211237421123753Coding
376. AGA1211274641127475Coding
377. AGA1111310811131091Coding
378. AAG1111324111132421Coding
379. CAG1111334601133470Coding
380. AAG1111341571134167Coding
381. ATT1211368131136824Coding
382. ATT1311369561136968Coding
383. TGC1211399271139938Coding
384. AGA1111400721140082Coding
385. AGA1311474531147465Coding
386. TCT1111511651151175Coding
387. TCC1211541591154170Coding
388. TTC1211559221155933Coding
389. TTC1211565231156534Coding
390. ACA1211617391161750Coding
391. TAG1211618181161829Coding
392. TAA1111650831165093Coding
393. AGG1211661571166168Coding
394. AGG1211662861166297Coding
395. AGA1111665651166575Coding
396. CCA1311817991181811Coding
397. AGG1211853421185353Coding
398. ATT1211903161190327Coding
399. CTT1311923781192390Coding
400. ATT1111929441192954Coding-Non coding
401. CAA1111972481197258Coding
402. TGC1111985001198510Coding
403. GGA1112031961203206Coding
404. ACC1212088671208878Coding
405. AAG1212104471210458Coding
406. AGA1212176051217616Coding
407. AGG1212268251226836Coding
408. ATT1112299701229980Coding
409. CTC1212311461231157Coding
410. AAG1212323921232403Coding
411. ATA1112345961234606Coding
412. TGC1212356281235639Coding
413. ATT1212373531237364Non coding
414. TCT1312399421239954Coding
415. TGC1212452771245288Coding
416. TAC1212465801246591Coding
417. TTA1212478661247877Coding
418. ATT1112538631253873Coding
419. CTT1212551061255117Coding
420. GAA1112636701263680Coding
421. TGA1212643111264322Coding
422. AGC1212677351267746Coding
423. TAA1212688201268831Coding
424. GCT1512722481272262Coding
425. TCA1212741621274173Coding
426. TGT1112777491277759Coding
427. TAT1112789521278962Coding
428. TCT1212843081284319Coding
429. TTA1212868121286823Coding
430. GCT1212884491288460Coding
431. ATA1112886681288678Coding
432. TTA1212888481288859Coding
433. TAA1213000271300038Coding
434. AAG1213006201300631Non coding
435. GGC1213036121303623Coding
436. GGC1213036841303695Coding
437. GGC1213037561303767Coding
438. GGC1213038101303821Coding
439. GGC1213038821303893Coding
440. GGC1213039181303929Coding
441. GGC1213039721303983Coding
442. GGC1213040261304037Coding
443. GGC1213040801304091Coding
444. GGC1213041161304127Coding
445. GGC1213041521304163Coding
446. GGC1213041701304181Coding
447. GGC1213042241304235Coding
448. GGC1213042961304307Coding
449. GGC1213043321304343Coding
450. GGC1213043861304397Coding
451. GGC1213044401304451Coding
452. GGC1213044761304487Coding
453. GGC1213045121304523Coding
454. AGA1513062351306249Coding
455. AGA1513062921306306Coding
456. AGA1213064031306414Coding
457. AGA1113105391310549Non coding
458. TGA1213125711312582Coding
459. TCT1113133971313407Non coding
460. TGA1113135861313596Non coding
461. CTA1213220951322106Non coding
462. TTG1213298611329872Coding
463. CAG1113322171332227Non coding
464. TAT1213353671335378Coding
465. TAT1113372211337231Coding
466. CTT1113373481337358Coding
467. ATG1113399601339970Coding-Non coding
468. ATT1213413381341349Non coding
469. CAG1213429861342997Coding
470. GCA1213434291343440Coding
471. TCT1213487631348774Coding
472. AGA1513537251353739Coding
473. TGA1213573301357341Coding
474. CAT1213577481357759Coding
475. TGA1213582991358310Non coding
476. CAT1213587171358728Non coding
477. CAT1313629671362979Coding
478. TTC1313729791372991Coding
479. AAG1113760291376039Coding
480. CAG1213830731383084Coding
481. CTC1213836851383696Coding
482. GCA1213884821388493Coding
483. TCT1113891051389115Coding
484. GAA1313906351390647Coding
485. TCA1213941391394150Coding
486. TTG1213941991394210Coding
487. AGA1113978831397893Coding
488. AGC1313997851399797Coding
489. CAT1114004561400466Coding
490. ACA1214053541405365Coding
491. GAA1114096591409669Coding
492. CCT1114160811416091Coding
493. CTA1214188691418880Coding
494. GGT1214217851421796Coding
495. TAA1214245621424573Coding
496. CAA1114280981428108Coding
497. CCA1214282341428245Coding
498. CAT1214318021431813Coding
499. ATC1514346841434698Coding
500. CTT1214394551439466Coding
501. AGA1414464141446427Coding
502. AGA1114484901448500Coding
503. TTG1214490451449056Coding
504. TGA1214510501451061Coding
505. ACT1214514411451452Coding
506. TGG1214518901451901Coding
507. AGA1114590711459081Coding
508. ATC1114593031459313Coding
509. CTT1314647451464757Coding
510. AGC1214676091467620Coding
511. AGT1214677291467740Coding
512. CTC1214720561472067Coding
513. AGG1214789021478913Coding
514. TTC1314887181488730Coding
515. AAC1514899461489960Coding
516. GAC1214931351493146Coding
517. GAT1215015671501578Coding
518. CAC1215020581502069Coding
519. TTG1215067651506776Coding
520. GAG1215107691510780Coding
521. TTG1315151121515124Coding
522. GAA1215157901515801Coding
523. CAG1315163201516332Coding
524. AAG1115168321516842Coding
525. TCT1115215791521589Coding
526. TCT1215220431522054Coding
527. TCT1115265551526565Coding
528. CTC1215315091531520Coding
529. TTC1215360151536026Coding
530. TAG1315392661539278Coding
531. CTG1215398171539828Coding
532. TGG1215439501543961Coding
533. TGC1515440591544073Coding
534. TAA1115446091544619Coding
535. CAA1115494671549477Coding
536. AGA1215508581550869Coding
537. ACA1115513811551391Coding
538. GCA1215542601554271Coding
539. GCA1215563751556386Coding
540. ACC1215614341561445Non coding
541. GAA1115673661567376Coding
542. CAT1315676631567675Coding
543. AGC1215741191574130Coding
544. AAT1215756761575687Coding
545. GAA1315757241575736Non coding
546. CTT1215780301578041Coding
547. AAC1115821361582146Coding
548. CAA1315824171582429Coding
549. AAT1215838711583882Coding
550. TTC1215984471598458Coding
551. AAT1216137641613775Coding
552. AGA1116140991614109Coding
553. GTT1216208351620846Coding
554. CAC1116231861623196Coding
555. CCA1216232661623277Coding
556. TGC1216249661624977Coding
557. CAA1216257691625780Coding
558. TCA1216276251627636Coding
559. AAT1216281411628152Coding
560. TCT1216323301632341Coding
561. AAT1216378941637905Coding
562. TAA1216381601638171Coding
563. ATC1216394731639484Coding
564. AAG1216481921648203Coding
565. AGA1216501351650146Coding
566. CTG1216621361662147Coding
567. ATG1116662221666232Coding
568. AAT1116673631667373Coding
569. CAT1216718571671868Coding
570. GAA1216774631677474Coding
571. TCT1216844931684504Coding
572. TAA1216887261688737Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.